YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CBP1
Organism: Saccharomyces cerevisiae
Length: 654 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CBP1.

Description E-value Query
Range
Subject
Range
gi|50290187, gi|... - gi|50290187|ref|XP_447525.1| hypothetical protein CAGL0I06314g [Candida glabrata CBS138], gi|4952683...
gi|49526835 - gi|49526835|emb|CAG60462.1| unnamed protein product [Candida glabrata]
224.0 [0..56] [614..46]
gi|499696 - gi|499696|gb|AAA34456.1| CBP1 [Saccharomyces cerevisiae]
143.0 [0..589] [654..1]

Back

Predicted Domain #1
Region A:
Residues: [1-557]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLPRLVRYR TERFIKMVPT RTLRRINHSS RDPIQKQVLA LIKANANLND NDKLKIRKYW  60
   61 SDMADYKSLR KQENSLLESS ILHEVKIEDF ISFINRTKTS SMTTRGIYRR ECLYQCKKNL 120
  121 DLVNQVVSQV SSVRHQKPLT TQLDTMRWCV DDAIGTGDIV MAADLFLLYY RLFTDDKKLD 180
  181 EQYAKKIISV LAYPNPLHDH VHLVKYLQLN SLFESITGGG IKLTRFQLET LSNKALGLSN 240
  241 EAPQLCKAIL NKLMNINYSL TNDLKLRDDQ VLLAYKSIDE NYRRGNVASV YSIWNKIKEH 300
  301 YVSISAHDSR IIYKVFKICT HNRAYRSICS EMFWQLTPEY YCNNPLILPA IIDFITKQDS 360
  361 LTMAKELMQN INRYTLPENH HIVWLNKRCL SSLLRMHLKF NDSNGVDRVL KQITTNFRAL 420
  421 SQENYQAIII HLFKTQNLDH IAKAVKLLDT IPPGQAMLAY GSIINEVVDW KLASKVKFTD 480
  481 NLMALVNDLL TKAHDFDPDH RNSLWNVVSA LYIKKLCHYK KRDGKFVANA KKDIDLAKLL 540
  541 YINAAKRSKT YWTKSNC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [558-654]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPFIASSPCD VKLKVNNQNR FTILRNIALS ALQIGRTDIF LWACAELYQN GMTIEELKLD  60
   61 WNFILKHQIR NSEFKTNKEI IQDIKKHGVS AVKRYLR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.827 N/A N/A a.48.3 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle