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Protein Overview: RIM4

General Information:
Name(s) found: RIM4 / YHL024W [SGD]
Description(s) found:
Found 22 descriptions.
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  • Putative RNA-binding protein required for the expression of early and middle sporulation genes [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 713 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: reciprocal meiotic recombination [IMPLink to PubMed article]
    premeiotic DNA synthesis [IMPLink to PubMed article]
    meiosis [IEPLink to PubMed article][IMPLink to PubMed article]
    sporulation resulting in formation of a cellular spore [IGILink to PubMed article][IMPLink to PubMed article]
    Molecular Function: RNA binding [IMPLink to PubMed article][ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTEISTADS LRDPPSNGLK ADSELVIRED IDQFLPSEVS SLGSDHQNDG EDSDTDSDNF  60
   61 LQDPEDDVDE ESTGRGTVTT TSTSTESRGR PSSCIFVASL AAALSDDELC LSVTENFKKY 120
  121 GDLARVKVLR DNANRPYAFV QYNNDHDAKH ALIRAQGTLL NGRRLRCEPA KVNRTLYLKN 180
  181 QQSIDFNEIS QICEKFGGLE QIVPDRTDNQ YTRRYTYPIS SANSWFVQFV YRDDAIRAYA 240
  241 NLRTDPNWII EWAQNINVPK NYNLLHKSKF KSSKYHQNNG IINNDGSNNN DNNNSNNNNR 300
  301 EDSRRNGDVI EEECGHVHGS DSEEKLTSDG IYDDEDKDSE ITIDKRSIFV GQLDKETTRE 360
  361 ELNRRFSTHG KIQDINLIFK PTNIFAFIKY ETEEAAAAAL ESENHAIFLN KTMHVQYKEV 420
  421 GGRHNRKFSG KNGGSNFNHH QFFSTRSGKT FTGPELNLAP PPINMYRKMS GGSQQESETM 480
  481 MPYMPMGPMP MGPPPPNAAS LSDFDMFPPS YSTFMKGMMP LRRKSMPNSW SSPSSKSVNS 540
  541 ENESVNGGDE NSELPSEIPE SSGRYNAANS FTTYNNSSAG NSNNNNNNNN SNSNKSQYKK 600
  601 RYARRSSYGY NEVPPKPYYF QPYYYHPMQY HMGPMGPLHP SQGSAGNHHP YMMVYPMSPP 660
  661 PPSGLDGSMI PPPINVSQSH AANHGSTHVH ANEFISNDTG DINEDNKAYS LDY

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) RIM4 SLD3

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #34 Asynchronous SPB prep Keck JM, et al. (2011)
    View Run MLP2 #31 Asynchronous Prep (Protease cleavage) Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..73] MSA 1.243997 View MSA. Confident ab initio structure predictions are available.
    2 View Details [74..229] PSI-BLAST 45.154902 Poly(A)-binding protein
    3 View Details [230..331] PSI-BLAST 43.154902 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    4 View Details [332..428] PSI-BLAST 43.154902 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    5 View Details [429..574] PSI-BLAST 3.30103 Fibrinogen
    6 View Details [575..713] MSA 4.167997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • nucleic acid binding
    		•  3.03004688154589 bayes_pls_golite062009
  • binding
    		•  2.41127885655304 bayes_pls_golite062009
  • RNA binding
    		•  1.96321378335448 bayes_pls_golite062009
  • protein binding
    		•  1.14508556628804 bayes_pls_golite062009
  • mRNA binding
    		•  0.79383576791259 bayes_pls_golite062009
    3
    Term Confidence Notes
  • nucleic acid binding
    		•  3.03004688154589 bayes_pls_golite062009
  • binding
    		•  2.41127885655304 bayes_pls_golite062009
  • RNA binding
    		•  1.96321378335448 bayes_pls_golite062009
  • protein binding
    		•  1.14508556628804 bayes_pls_golite062009
  • mRNA binding
    		•  0.79383576791259 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle