| Protein: | RIM4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 713 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIM4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..713] | [1..713] |
|
|
0.0 | [84..557] | [2..493] |
|
|
0.0 | [84..558] | [2..494] |
|
|
0.0 | [84..558] | [2..494] |
|
|
0.0 | [84..571] | [2..518] |
|
|
0.0 | [84..562] | [2..509] |
|
|
0.0 | [84..555] | [2..490] |
|
|
0.0 | [71..580] | [5..573] |
|
Region A: Residues: [1-73] |
1 11 21 31 41 51
| | | | | |
1 MKTEISTADS LRDPPSNGLK ADSELVIRED IDQFLPSEVS SLGSDHQNDG EDSDTDSDNF 60
61 LQDPEDDVDE EST
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.916 | N/A | N/A | a.23.5 | Hemolysin expression modulating protein HHA |
|
Region A: Residues: [74-229] |
1 11 21 31 41 51
| | | | | |
1 GRGTVTTTST STESRGRPSS CIFVASLAAA LSDDELCLSV TENFKKYGDL ARVKVLRDNA 60
61 NRPYAFVQYN NDHDAKHALI RAQGTLLNGR RLRCEPAKVN RTLYLKNQQS IDFNEISQIC 120
121 EKFGGLEQIV PDRTDNQYTR RYTYPISSAN SWFVQF
|
| Detection Method: | |
| Confidence: | 45.154902 |
| Match: | 1cvjA_ |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 3.03004688154589 | bayes_pls_golite062009 |
| binding | 2.41127885655304 | bayes_pls_golite062009 |
| RNA binding | 1.96321378335448 | bayes_pls_golite062009 |
| protein binding | 1.14508556628804 | bayes_pls_golite062009 |
| mRNA binding | 0.79383576791259 | bayes_pls_golite062009 |
|
Region A: Residues: [230-331] |
1 11 21 31 41 51
| | | | | |
1 VYRDDAIRAY ANLRTDPNWI IEWAQNINVP KNYNLLHKSK FKSSKYHQNN GIINNDGSNN 60
61 NDNNNSNNNN REDSRRNGDV IEEECGHVHG SDSEEKLTSD GI
|
| Detection Method: | |
| Confidence: | 43.154902 |
| Match: | 2up1A_ |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 3.03004688154589 | bayes_pls_golite062009 |
| binding | 2.41127885655304 | bayes_pls_golite062009 |
| RNA binding | 1.96321378335448 | bayes_pls_golite062009 |
| protein binding | 1.14508556628804 | bayes_pls_golite062009 |
| mRNA binding | 0.79383576791259 | bayes_pls_golite062009 |
|
Region A: Residues: [332-428] |
1 11 21 31 41 51
| | | | | |
1 YDDEDKDSEI TIDKRSIFVG QLDKETTREE LNRRFSTHGK IQDINLIFKP TNIFAFIKYE 60
61 TEEAAAAALE SENHAIFLNK TMHVQYKEVG GRHNRKF
|
| Detection Method: | |
| Confidence: | 43.154902 |
| Match: | 2up1A_ |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [429-574] |
1 11 21 31 41 51
| | | | | |
1 SGKNGGSNFN HHQFFSTRSG KTFTGPELNL APPPINMYRK MSGGSQQESE TMMPYMPMGP 60
61 MPMGPPPPNA ASLSDFDMFP PSYSTFMKGM MPLRRKSMPN SWSSPSSKSV NSENESVNGG 120
121 DENSELPSEI PESSGRYNAA NSFTTY
|
| Detection Method: | |
| Confidence: | 3.30103 |
| Match: | 1deqA_ |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [575-713] |
1 11 21 31 41 51
| | | | | |
1 NNSSAGNSNN NNNNNNSNSN KSQYKKRYAR RSSYGYNEVP PKPYYFQPYY YHPMQYHMGP 60
61 MGPLHPSQGS AGNHHPYMMV YPMSPPPPSG LDGSMIPPPI NVSQSHAANH GSTHVHANEF 120
121 ISNDTGDINE DNKAYSLDY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
