| Protein: | RIM4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 713 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIM4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..713] | [1..713] |
|
|
0.0 | [84..557] | [2..493] |
|
|
0.0 | [84..558] | [2..494] |
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0.0 | [84..558] | [2..494] |
|
|
0.0 | [84..571] | [2..518] |
|
|
0.0 | [84..562] | [2..509] |
|
|
0.0 | [84..555] | [2..490] |
|
|
0.0 | [71..580] | [5..573] |
|
Region A: Residues: [1-73] |
1 11 21 31 41 51
| | | | | |
1 MKTEISTADS LRDPPSNGLK ADSELVIRED IDQFLPSEVS SLGSDHQNDG EDSDTDSDNF 60
61 LQDPEDDVDE EST
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.548 | 0.060 | reciprocal meiotic recombination | a.65.1 | Annexin |
| View | Download | 0.510 | 0.024 | reciprocal meiotic recombination | a.64.1 | Saposin |
| View | Download | 0.481 | 0.022 | reciprocal meiotic recombination | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.916 | 0.007 | reciprocal meiotic recombination | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.916 | N/A | N/A | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.548 | N/A | N/A | a.65.1 | Annexin |
| View | Download | 0.510 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.481 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.422 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.422 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.402 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.372 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.354 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.351 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.348 | N/A | N/A | a.28.1 | ACP-like |
| View | Download | 0.326 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.312 | N/A | N/A | a.60.1 | SAM/Pointed domain |
| View | Download | 0.296 | N/A | N/A | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.288 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.267 | N/A | N/A | a.49.1 | C-terminal domain of B transposition protein |
| View | Download | 0.253 | N/A | N/A | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.235 | N/A | N/A | a.118.14 | FliG |
| View | Download | 0.227 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.226 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.226 | N/A | N/A | a.21.1 | HMG-box |
| View | Download | 0.223 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.213 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.209 | N/A | N/A | a.5.2 | UBA-like |
|
Region A: Residues: [74-229] |
1 11 21 31 41 51
| | | | | |
1 GRGTVTTTST STESRGRPSS CIFVASLAAA LSDDELCLSV TENFKKYGDL ARVKVLRDNA 60
61 NRPYAFVQYN NDHDAKHALI RAQGTLLNGR RLRCEPAKVN RTLYLKNQQS IDFNEISQIC 120
121 EKFGGLEQIV PDRTDNQYTR RYTYPISSAN SWFVQF
|
| Detection Method: | |
| Confidence: | 45.154902 |
| Match: | 1cvjA_ |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 3.03004688154589 | bayes_pls_golite062009 |
| binding | 2.41127885655304 | bayes_pls_golite062009 |
| RNA binding | 1.96321378335448 | bayes_pls_golite062009 |
| protein binding | 1.14508556628804 | bayes_pls_golite062009 |
| mRNA binding | 0.79383576791259 | bayes_pls_golite062009 |
|
Region A: Residues: [230-331] |
1 11 21 31 41 51
| | | | | |
1 VYRDDAIRAY ANLRTDPNWI IEWAQNINVP KNYNLLHKSK FKSSKYHQNN GIINNDGSNN 60
61 NDNNNSNNNN REDSRRNGDV IEEECGHVHG SDSEEKLTSD GI
|
| Detection Method: | |
| Confidence: | 43.154902 |
| Match: | 2up1A_ |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 3.03004688154589 | bayes_pls_golite062009 |
| binding | 2.41127885655304 | bayes_pls_golite062009 |
| RNA binding | 1.96321378335448 | bayes_pls_golite062009 |
| protein binding | 1.14508556628804 | bayes_pls_golite062009 |
| mRNA binding | 0.79383576791259 | bayes_pls_golite062009 |
|
Region A: Residues: [332-428] |
1 11 21 31 41 51
| | | | | |
1 YDDEDKDSEI TIDKRSIFVG QLDKETTREE LNRRFSTHGK IQDINLIFKP TNIFAFIKYE 60
61 TEEAAAAALE SENHAIFLNK TMHVQYKEVG GRHNRKF
|
| Detection Method: | |
| Confidence: | 43.154902 |
| Match: | 2up1A_ |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [429-574] |
1 11 21 31 41 51
| | | | | |
1 SGKNGGSNFN HHQFFSTRSG KTFTGPELNL APPPINMYRK MSGGSQQESE TMMPYMPMGP 60
61 MPMGPPPPNA ASLSDFDMFP PSYSTFMKGM MPLRRKSMPN SWSSPSSKSV NSENESVNGG 120
121 DENSELPSEI PESSGRYNAA NSFTTY
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| Detection Method: | |
| Confidence: | 3.30103 |
| Match: | 1deqA_ |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [575-713] |
1 11 21 31 41 51
| | | | | |
1 NNSSAGNSNN NNNNNNSNSN KSQYKKRYAR RSSYGYNEVP PKPYYFQPYY YHPMQYHMGP 60
61 MGPLHPSQGS AGNHHPYMMV YPMSPPPPSG LDGSMIPPPI NVSQSHAANH GSTHVHANEF 120
121 ISNDTGDINE DNKAYSLDY
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.208 | 0.182 | reciprocal meiotic recombination | a.1.1 | Globin-like |
| View | Download | 0.573 | 0.021 | reciprocal meiotic recombination | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.269 | 0.013 | reciprocal meiotic recombination | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.302 | 0.011 | reciprocal meiotic recombination | c.84.1 | Phosphoglucomutase, first 3 domains |
