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Protein Overview: SCW11

General Information:
Name(s) found: SCW11 / YGL028C [SGD]
Description(s) found:
Found 24 descriptions.
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  • Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based on its regulation by Ste12p [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 542 amino acids

    Gene Ontology:
    Cellular Component: fungal-type cell wall [IDALink to PubMed article]
    Biological Process: cytokinesis, completion of separation [IMPLink to PubMed article]
    Molecular Function: glucan 1,3-beta-glucosidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISPISFLSS LLCLTYLTSA LPILPKREVV TRVHTASTTN VVTDFYSTTT EVVIAPTVEF  60
   61 LISDSVTFTT TLIPQGVNPT AEPTTTITKV LLKKAEMSTS SQPTSTLQPS TIPQSTSSFQ 120
  121 AESTLQAVST QQTAMSVSAG TSEDVQQLAT TSTSISSSPS PTTTSTSTQN IVSGVGEANV 180
  181 EGNTQSQHHS YQAAATSTLN QQTSTSIASQ ESTESTNTPT SSSTSSSTSS STSSSTSSST 240
  241 SSSTSSSTSS STSSSTSSTQ ETAATTSEGS SSSSAAITSS PKAIAYSPYN DDGSCKSADA 300
  301 VSSDLTLIKS KGISKIRVYG TDCNSFETVQ PAAVKLGIKI NQGLYITSSG VDSIDDSVTT 360
  361 LIQYGQTNGW DVFDFITVGN EAINNGWCSV SDLISKISSV KSKLSEAGYS GQITTSEPPV 420
  421 SFENNPDLCK KSDIDFVGIN PHAYFDTSAS AETAGTFVKG QVELIQGVCG TSNVFVTETG 480
  481 YPSSGIQNGG NIPSTANQIT AVQNILNEMD LDVTILSTYN DYWKAPGDYG IEQSFGVIEY 540
  541 FP

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Qiu et al. (2008) DSE4 SCW11

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run CAB1 No Comments Hazbun TR, et al. (2003)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data SCW11 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..281] ORFEUS 13.09 Sec24
    2 View Details [282..346]
    [367..379]
    [409..415]    		 PSI-BLAST 67.39794 Plant beta-glucanases
    3 View Details [347..366]
    [380..408]
    [416..440]
    [458..477]    		 PSI-BLAST 67.39794 Plant beta-glucanases
    4 View Details [441..457]
    [478..542]    		 PSI-BLAST 67.39794 Plant beta-glucanases

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • hydrolase activity, acting on glycosyl bonds
    		•  5.36248919165223 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  4.11319792356479 bayes_pls_golite062009
  • glucosidase activity
    		•  3.69195576225095 bayes_pls_golite062009
  • beta-glucosidase activity
    		•  3.14931331494576 bayes_pls_golite062009
  • chitinase activity
    		•  2.45357334610104 bayes_pls_golite062009
  • glucan 1,3-beta-glucosidase activity
    		•  2.19754833026935 bayes_pls_golite062009
  • alpha-amylase activity
    		•  2.09193270404736 bayes_pls_golite062009
  • amylase activity
    		•  2.03484942782894 bayes_pls_golite062009
  • catalytic activity
    		•  1.85569074294201 bayes_pls_golite062009
  • hydrolase activity
    		•  1.53559572084132 bayes_pls_golite062009
  • hexosaminidase activity
    		•  1.26857012744249 bayes_pls_golite062009
  • receptor binding
    		•  0.709153600415243 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.45065632894721 bayes_pls_golite062009
  • binding
    		•  0.391406996198514 bayes_pls_golite062009
  • signal transducer activity
    		•  0.204404145728779 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.204404145728779 bayes_pls_golite062009
  • pattern binding
    		•  0.113396113487931 bayes_pls_golite062009
  • polysaccharide binding
    		•  0.10746671207581 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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