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Protein Overview: PAD1

General Information:
Name(s) found: PAD1 / YDR538W [SGD]
Description(s) found:
Found 28 descriptions.
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  • Phenylacrylic acid decarboxylase, confers resistance to cinnamic acid, decarboxylates aromatic carboxylic acids to the corresponding vinyl derivatives; homolog of E. coli UbiX [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 242 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    Biological Process: aromatic compound catabolic process [IDALink to PubMed article]
    Molecular Function: carboxy-lyase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLFPRRTNI AFFKTTGIFA NFPLLGRTIT TSPSFLTHKL SKEVTRASTS PPRPKRIVVA  60
   61 ITGATGVALG IRLLQVLKEL SVETHLVISK WGAATMKYET DWEPHDVAAL ATKTYSVRDV 120
  121 SACISSGSFQ HDGMIVVPCS MKSLAAIRIG FTEDLITRAA DVSIKENRKL LLVTRETPLS 180
  181 SIHLENMLSL CRAGVIIFPP VPAFYTRPKS LHDLLEQSVG RILDCFGIHA DTFPRWEGIK 240
  241 SK

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) ECM30 PAD1 RRT1 UBP15

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen SXM1 PAD1 1 Unpublished Fields Lab Data
    View Screen PRP16 PAD1 1 Unpublished Fields Lab Data
    View Screen CUS1 PAD1 1 Unpublished Fields Lab Data
    View Screen NAF1 PAD1 1 Hazbun TR, et al. (2003)
    View Screen COG4 PAD1 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data PAD1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..242] PSI-BLAST 34.522879 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • carboxy-lyase activity
    		•  1.79168084682693 bayes_pls_golite062009
  • catalytic activity
    		•  1.51672397362026 bayes_pls_golite062009
  • phosphopantothenoylcysteine decarboxylase activity
    		•  1.48487339529068 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  1.47015520875054 bayes_pls_golite062009
  • phosphopantothenate--cysteine ligase activity
    		•  0.202735745322414 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle