YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: WHI4

General Information:
Name(s) found: WHI4 / YDL224C [SGD]
Description(s) found:
Found 25 descriptions.
SHOW ALL
  • Putative RNA binding protein and partially redundant Whi3p homolog that regulates the cell size requirement for passage through Start and commitment to cell division [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 649 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: regulation of cell size [IGILink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVHNQTNL NESKFLIERA FSSSSETVPL SKEATYPMPT AYSFSAVRSN SETNIKRENP  60
   61 QGFAKEPIMT SMLHNLTMST GKGNGNDVNS LAPHDVDVGP YCLLLRNLPK DITLRECYCI 120
  121 FSLATGVSSI ELKRDDREPF NDNEKVVVVK FGSLSLVTHY ANILNSKSEI FGPSFPFRSH 180
  181 IDVVNEQTQL PVSFQEHVSS GTTNSSPKNY QLSSSAQNEI QNQSFNTISY GKTSSSPLGP 240
  241 SAAKPRPSLL SERSLRFSFN DPFGLETISQ RKESVPFLRN SISQHDLSNV TTTPVPAGMP 300
  301 PQKDAGKSLL LLEKDEINES IWNGDELVND VGNSSFGASL QEPPMSSTPV MEWNASSTAN 360
  361 IPLFQLSSQE NHQSNLLPPS HHSISQDVPH IQSQPNLNNS GVIHSATSLP HYHLLNQINA 420
  421 STKTQSIQQS VSNVPSNLDL NLQTENGHPQ SSAPNGSSIF NNQKVNQGFL VSEQDTSTIS 480
  481 RQKECSSTAS ASAFSKNNET NVAGSTTISQ ADLSLLAKVP PPANPADQNP PCNTLYVGNL 540
  541 PPDATEQELR QLFSNQQGFR RLSFRNKMNS HGHGNGHGHG PICFVEFEDV SFATRALAEL 600
  601 YGSQLPHPRP SLNNKGGIRL SFSKNPLGVR GSNSRSKSGY SFNGSYGKS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #02 Alpha Factor Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen CAB3 WHI4 2 Unpublished Fields Lab Data

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data WHI4 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..326] deduced N/A No confident structure predictions are available.
    2 View Details [327..447] MSA 4.225997 View MSA. No confident structure predictions are available.
    3 View Details [448..511] deduced N/A No confident structure predictions are available.
    4 View Details [512..649] PSI-BLAST 37.232149 Splicesomal U1A protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.80563734517858 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.10800250002791 bayes_pls_golite062009
  • RNA binding
    		•  1.27892507616795 bayes_pls_golite062009
  • protein binding
    		•  1.02232785292059 bayes_pls_golite062009
  • mRNA binding
    		•  0.358102192108578 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  2.80563734517858 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.10800250002791 bayes_pls_golite062009
  • RNA binding
    		•  1.27892507616795 bayes_pls_golite062009
  • protein binding
    		•  1.02232785292059 bayes_pls_golite062009
  • mRNA binding
    		•  0.358102192108578 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle