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Protein Overview: RBK1

General Information:
Name(s) found: RBK1 / YCR036W [SGD]
Description(s) found:
Found 23 descriptions.
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  • Putative ribokinase [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 333 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: D-ribose metabolic process [ISSLink to PubMed article]
    Molecular Function: ATP binding [ISSLink to PubMed article]
    ribokinase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGITVIGSLN YDLDTFTDRL PNAGETFRAN HFETHAGGKG LNQAAAIGKL KNPSSRYSVR  60
   61 MIGNVGNDTF GKQLKDTLSD CGVDITHVGT YEGINTGTAT ILIEEKAGGQ NRILIVEGAN 120
  121 SKTIYDPKQL CEIFPEGKEE EEYVVFQHEI PDPLSIIKWI HANRPNFQIV YNPSPFKAMP 180
  181 KKDWELVDLL VVNEIEGLQI VESVFDNELV EEIREKIKDD FLGEYRKICE LLYEKLMNRK 240
  241 KRGIVVMTLG SRGVLFCSHE SPEVQFLPAI QNVSVVDTTG AGDTFLGGLV TQLYQGETLS 300
  301 TAIKFSTLAS SLTIQRKGAA ESMPLYKDVQ KDA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data RBK1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..333] PSI-BLAST 315.38764 Ribokinase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribokinase activity
    		•  4.13972810632318 bayes_pls_golite062009
  • carbohydrate kinase activity
    		•  3.53872211951287 bayes_pls_golite062009
  • kinase activity
    		•  2.44230326483029 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.43969902311075 bayes_pls_golite062009
  • transferase activity
    		•  2.15883296431019 bayes_pls_golite062009
  • phosphofructokinase activity
    		•  1.98381934960918 bayes_pls_golite062009
  • catalytic activity
    		•  1.74474587246986 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  1.01768986812996 bayes_pls_golite062009
  • binding
    		•  0.750579388499649 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.43271347210671 bayes_pls_golite062009
  • DNA binding
    		•  0.0886731070705062 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0561488099067549 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle