Protein Overview: SLM5

General Information:
Name(s) found:	SLM5 / YCR024C [SGD]
Description(s) found: SHOW ONLY BEST	pir\|\|S19435 hypothetical protein YCR024c - yeast (Saccharomyces cerevisiae) [NCBI NR] gi\|6319872\|ref\|NP_009953.1\| Mitochondrial asparaginyl-tRNA synthetase; Slm5p [Saccharomyces cerevisiae] [NCBI NR] gi\|1907168\|emb\|CAA42316.1\| asn-tRNA synthetase, mitochondrial [Saccharomyces cerevisiae] [NCBI NR] gi\|135160\|sp\|P25345.1\|SYNM_YEAST RecName: Full=Asparaginyl-tRNA synthetase, mitochondrial; AltName: Full=Asparagine--tRNA ligase; Short=AsnRS; Flags: Precursor [NCBI NR] Asparaginyl-tRNA synthetase, mitochondrial OS=Saccharomyces cerevisiae GN=SLM5 PE=1 SV=1 [Swiss-Prot] SLM5 Asparaginyl-tRNA synthetase, mitochondrial [mips] Mitochondrial asparaginyl-tRNA synthetase [SGD] YCR024C, Chr III from 160736-162214, reverse complement [yeast_orfs2] Chr III from 160736-162214, reverse complement [yeastorf3.fasta] Chr III from 162214-160736, reverse complement [yeastorf5.fasta] (P25345) Asparaginyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.22) (Asparagine--tRNA ligase) (AsnRS) [4932.FASTACCERV.txt] YCR024C SGDID:S0000618, Chr III from 162217-160739, reverse complement, Uncharacterized ORF [yeastflysequest.fasta] Ycr024cp [Saccharomyces cerevisiae]gi\|1907168\|emb\|CAA42316.1\| asn-tRNA synthetase, mitochondrial [Saccharomyces cerevisiae]gi\|83213\|pir\|\|S19435 hypothetical protein YCR024c - yeast (Saccharomyces cerevisiae)gi\|135160\|sp\|P25345\|SYNM_YEAST Asparaginyl-tR [nrdb_11152004_Chlamydomonas] SLM5 SGDID:S000000618, Chr III from 162217-160739, reverse complement, Verified ORF, "Mitochondrial asparaginyl-tRNA synthetase" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] SLM5 SGDID:S000000618, Chr III from 162218-160740, reverse complement, Verified ORF, "Mitochondrial asparaginyl-tRNA synthetase" [yeast-contam.fasta] Mitochondrial asparaginyl-tRNA synthetase; Slm5p [Saccharomyces cerevisiae] [nr-271106-contam.fasta] asn-tRNA synthetase, mitochondrial [Saccharomyces cerevisiae] [nr-271106-contam.fasta] Asparaginyl-tRNA synthetase, mitochondrial precursor (Asparagine--tRNA ligase) (AsnRS) [nr-271106-contam.fasta] [chemostatdb.fasta] Asparagine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLM5 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] SLM5 SGDID:S000000618, Chr III from 162222-160744, Genome Release 64-1-1, reverse complement, Verified ORF, "Mitochondrial asparaginyl-tRNA synthetase" [yeast-030211-contam.fasta] SLM5 SGDID:S000000618, Chr III from 162222-160744, Genome Release 64-2-1, reverse complement, Verified ORF, "Mitochondrial asparaginyl-tRNA synthetase" [20141208_orf_trans.fasta] YCR024C SGDID:S000000618, Chr III from 162222-160744, Genome Release 64-1-1, reverse complement, Verified ORF, "Mitochondrial asparaginyl-tRNA synthetase" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
Organism:	Saccharomyces cerevisiae
Length:	492 amino acids
Gene Ontology:
Cellular Component:	mitochondrion [IDA ][ISS]
Biological Process:	translation [IDA]
Molecular Function:	asparagine-tRNA ligase activity [IDA][ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHAFTFLKG GRFYSSLTVK SLYEQVHHTS HDPISINGWI KSIRLLKRIA FLDLQDGTSV  60
   61 NPLRIVIPLT NTDEVQFLKI LKTGQTLSIS NATWQSTPNR KQPFELQIKN PVKSIKLVGP 120
  121 VSENYPLQKK YQTLRYLRSL PTLKYRTAYL SAILRLRSFV EFQFMLYFQK NHFTKVSPPI 180
  181 LTSNDCEGAG ELFQVSTNTS PTASSYFGKP TYLTVSTQLH LEILALSLSR CWTLSPCFRA 240
  241 EKSDTPRHLS EFWMLEVEMC FVNSVNELTS FVETTIKHII KACIDNQQEL LPKQFISSQE 300
  301 NNASSELSIN QETQQIKTRW EDLINEKWHN ITYTNAIEIL KKRHNEVSHF KYEPKWGQPL 360
  361 QTEHEKFLAG EYFKSPVFVT DYPRLCKPFY MKQNSTPDDT VGCFDLLVPG MGEIIGGSLR 420
  421 EDDYDKLCRE MKARGMNRSG ELDWYVSLRK EGSAPHGGFG LGFERFISYL YGNHNIKDAI 480
  481 PFYRTSAESI DF

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Riffle et al. (2010) (Unpublished Data)		RRN6 SLM5 SPS22

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	PSE1	SLM5	1	Unpublished Fields Lab Data
View Screen	PHO85	SLM5	1	Unpublished Fields Lab Data
View Screen	BUB1	SLM5	1	Unpublished Fields Lab Data
View Screen	YJR056C	SLM5	1	Unpublished Fields Lab Data

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

	PROTEIN(S)	PUBLICATION
View Data	SLM5	Huh WK, et al. (2003)

Protein Structure Data

[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..128]	PSI-BLAST	861.0103	No description for 1lkhA_ was found.
2	View Details	[129..492]	PSI-BLAST	861.0103	No description for 1lkhA_ was found.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Source: Reynolds et al. (2008)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2