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Protein Overview: APD1

General Information:
Name(s) found: APD1 / YBR151W [SGD]
Description(s) found:
Found 33 descriptions.
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  • Protein of unknown function, required for normal localization of actin patches and for normal tolerance of sodium ions and hydrogen peroxide; localizes to both cytoplasm and nucleus [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 316 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFLNIFKQK RGDEASQLSA KGREEISQSI KICKSDDAAN EHSCSGDCKT EIEEGEQAFA  60
   61 KLKIEHETPL LNSSKTPKIH FVVPTSQIDW QHDACLEDPK SVQYKISQWC DKNSAKFSNV 120
  121 GTGKTLNCAV SSLPKDIMDI DVMRGTKNNV LILPYFIWLN DLRSDDVEAT LDGLVPDLLD 180
  181 ENISREKLLE TRPNVAVARE RAFVFICSHT TRDKRCGITA PYLKKVFDSK LQEHGLYRDN 240
  241 SDYRAEGVKI AFVNHVGGHK FAANVQIYLR NPNTLIWLGR VTPTIVPSIV EHLIVPEEPT 300
  301 LPFPEKVRCI KKYQSW

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) APD1 OXP1 SPC98 YPL199C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data APD1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..241] MSA 1.019949 View MSA. No confident structure predictions are available.
    2 View Details [242..316] PSI-BLAST 3.0 Thioredoxin-like 2Fe-2S ferredoxin


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle