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Protein Overview: YBL005W-A

General Information:
Name(s) found: YBL005W-A [SGD]
Description(s) found:
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  • gi|74645039|sp|Q12266.1|YB11A_YEAST RecName: Full=Transposon Ty1-BL Gag polyprotein; AltName: Full=Gag-p49; AltName: Full=Transposon Ty1 protein A; Short=TY1A; Short=TYA; AltName: Full=p58; Contains: RecName: Full=Capsid protein; Short=CA; AltName: Full=G [NCBI NR]
  • gi|6319467|ref|NP_009550.1| Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; Ybl [NCBI NR]
  • pir||S45737 TyA protein - yeast (Saccharomyces cerevisiae) retrotransposon Ty1 [NCBI NR]
  • gi|535985|emb|CAA84823.1| TY1A [Saccharomyces cerevisiae] [NCBI NR]
  • gi|535980|emb|CAA84819.1| TY1A [Saccharomyces cerevisiae] [NCBI NR]
  • Transposon Ty1-BL Gag polyprotein OS=Saccharomyces cerevisiae GN=TY1A-BL PE=1 SV=1 [Swiss-Prot]
  • TY1A TY1A protein [mips]
  • - TY1A - TY1A protein [mips]
  • Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag [SGD]
  • YBL005W-A, Chr II from 221292-222614 [yeast_orfs2]
  • Chr II from 221292-222614 [yeastorf3.fasta]
  • >Q12266 (Q12266) Chromosome II reading frame ORF YBL005W [4932.FASTACCERV.txt]
  • YBL005W-A SGDID:S0002146, Chr II from 221295-222617, Ty ORF [yeastflysequest.fasta]
  • YBL005W-A SGDID:S0002146, Chr II from 221333-222655, Ty ORF [10112005cervSGD.fasta]
  • TyA Gag protein; the main structural constituent of virus-like particles (VLPs) [Saccharomyces cerevisiae]gi|535985|emb|CAA84823.1| TY1A [Saccharomyces cerevisiae]gi|535980|emb|CAA84819.1| TY1A [Saccharomyces cerevisiae]gi|626961|pir||S45737 TyA protei [nrdb_11152004_Chlamydomonas]
  • (Q12266) TY1A protein [cerv4932.FASTAC]
  • YBL005W-A SGDID:S000002146, Chr II from 221333-222655, transposable_element_gene, "TyA Gag protein; the main structural constituent of virus-like particles (VLPs)" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YBL005W-A SGDID:S000002146, Chr II from 221333-222655, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of viru [yeast-contam.fasta]
  • TY1A [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; Ybl005w-ap [Saccharomyces cerev [nr-271106-contam.fasta]
  • YBL005W-A SGDID:S000002146, Chr II from 221333-222655, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag" [yeast-bovrabprots.fasta]
  • [chemostatdb.fasta]
  • Transposon Ty1-BL Gag polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1A-BL PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • YBL005W-A SGDID:S000002146, Chr II from 221330-222652, Genome Release 64-1-1, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag" [yeast-030211-contam.fasta]
  • YBL005W-A SGDID:S000002146, Chr II from 221330-222652, Genome Release 64-2-1, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag" [20141208_orf_trans.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 440 amino acids

    Gene Ontology:
    Cellular Component: retrotransposon nucleocapsid [ISSLink to PubMed article]
    Biological Process: transposition, RNA-mediated [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]
    protein binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS PIFHGSACAS VTSKEVQTTQ DPLDISASKT EECEKVSTQA NSQQPTTPPS  60
   61 SAVPENHHHA SPQAAQVPLP QNGPYPQQRM MNTQQANISG WPVYGHPSLM PYPPYQMSPM 120
  121 YAPPGAQSQF TQYPQYVGTH LNTPSPESGN SFPDSSSAKS NMTSTNQHVR PPPILTSPND 180
  181 FLNWVKIYIK FLQNSNLGDI IPTATRKAVR QMTDDELTFL CHTFQLFAPS QFLPPWVKDI 240
  241 LSVDYTDIMK ILSKSINKMQ SDTQEVNDIT TLATLHYNGS TPADAFEAEV TNILDRLNNN 300
  301 GIPINNKVAC QFIMRGLSGE YKFLPYARHR CIHMTVADLF SDIHSMYEEQ QESKRNKSTY 360
  361 RRSPSDEKKD SRTYTNTTKP KSITRNSQKP NNSQSRTARA HNVSTFNNSP GPDNDLIRGS 420
  421 TTEPIQLKNT HDLHLRPGTY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run TOR2 No Comments Reinke A, et al. (2004)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run DAD1 Dam1-765 complex purified from yeast with Dad1-TAP Shimogawa MM, et al. (2006)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..180] Pfam 74.455932 No description for PF01021.9 was found. No confident structure predictions are available.
    2 View Details [181..328] deduced N/A No confident structure predictions are available.
    3 View Details [329..440] MSA 1.006975 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle