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Protein Overview: SYKC_SCHPO

General Information:
Name(s) found: SYKC_SCHPO [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
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  • Lysine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=krs1 PE=3 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 591 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEQVNGVT QAVKALVLDP VTGEQVSKTE LKKREKQRAR ELAKAKKQAE KAASAPVAAP  60
   61 KSSSKKEEDL DPSQYFENRS RTIMELRQTK DPNPYPHKFQ VTITLPEFIA KYEGLARGET 120
  121 KPEVEVAVAG RVLGLRTAGN KLRFYEIHAD GKKLQVMCQA QDADTVDFAA QHEHLRRGDI 180
  181 IGIRGYPGRS NPKGRADGEL SIFARQCVLL SPCLRMLPKE HYGLKDLEIR HRQRYLDLIM 240
  241 NRSTRDRFVM RSRIIQYIRH FFDSRDFMEV ETPMMNMIAG GATAKPFVTH HNDLDMDLYM 300
  301 RIAPELYLKM LVVGGLDRVY EIGRQFRNEG ADLTHNPEFT SIEFYQAYAD YYDLMDTTEE 360
  361 LLSGLVKDLT GSYKVPYHPE GPEGPKWELD FSRPWRRINM IEYLEEKLNT KFPPGDQLHT 420
  421 PEANAFLRDL CAKHGVECAP PQTCSRLLDK LVGEFIESEC INPTFIIGHP QMMSPLAKYH 480
  481 RSDAGLCERF EAFVATKEIC NAYTELNDIF DQRARFEEQA RQKAQGDDEA QIIDENFCTA 540
  541 LEYGLPPTGG WGMGVDRLVM FLTDSNTIRE VLLFPHMKPE VQAAEPTVVK E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..591] PSI-BLAST 153.0 Lysyl-tRNA synthetase (LysRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.89468709683036 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.89468709683036 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.88410036819636 bayes_pls_golite062009
  • ligase activity
    		•  6.92073480193262 bayes_pls_golite062009
  • lysine-tRNA ligase activity
    		•  5.79033103181143 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  3.80084837437429 bayes_pls_golite062009
  • phenylalanine-tRNA ligase activity
    		•  2.99105702052936 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  2.46505535069103 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  2.43759174701552 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  2.29229136935761 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  2.18642354927 bayes_pls_golite062009
  • structural molecule activity
    		•  2.08258913217268 bayes_pls_golite062009
  • catalytic activity
    		•  1.99372273395202 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  1.82594054955281 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  1.72215103383322 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.96756670903925 bayes_pls_golite062009
  • asparagine-tRNA ligase activity
    		•  0.921492123574877 bayes_pls_golite062009
  • binding
    		•  0.916222310895772 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.56590887755068 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.375542987753806 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.305684604963838 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.281662799812287 bayes_pls_golite062009
  • DNA binding
    		•  0.0309732052586011 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle