Protein Overview: alp-1

General Information:
Name(s) found:	alp-1 / CE39401 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00001132 locus:alp-1 status:Confirmed UniProt:G5EFG1 protein_id:CAJ43909.1 [WormBase] gi\|82658044\|emb\|CAJ43909.1\| C. elegans protein T11B7.4e, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR] gi\|82658043\|emb\|CAJ43902.1\| C. elegans protein T11B7.4e, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR] gi\|115532934\|ref\|NP_001040987.1\| ALP/Enigma encoding family member (alp-1) [Caenorhabditis elegans] [NCBI NR] CE39401 WBGene00001132 locus:alp-1 status:Confirmed UniProt:Q2XN05_CAEEL protein_id:CAJ43909.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE39401 WBGene00001132 locus:alp-1 status:Confirmed UniProt:Q2XN05_CAEEL protein_id:CAJ43909.1\| [wormORF-contam.fasta] CE39401 WBGene00001132 locus:alp-1 status:Confirmed TR:Q2XN05 protein_id:CAJ43909.1 [wormpep160-contam.fasta] Hypothetical protein T11B7.4e [Caenorhabditis elegans] [nr-271106-contam.fasta] ALP/Enigma encoding family member (alp-1) [Caenorhabditis elegans] [nr-271106-contam.fasta] CE39401 WBGene00001132 locus:alp-1 status:Confirmed UniProt:Q2XN05 protein_id:CAJ43909.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE39401 WBGene00001132 locus:alp-1 status:Confirmed UniProt:G5EFG1 protein_id:CAJ43909.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta] Isoform of G5EFL5, ALP/Enigma encoding OS=Caenorhabditis elegans GN=alp-1 PE=1 SV=1 [CAEEL.fasta.20160308]
Organism:	Caenorhabditis elegans
Length:	684 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	pharyngeal pumping [IMP] locomotory behavior [IMP] determination of adult lifespan [IMP]
Molecular Function:	zinc ion binding [IEA] protein binding [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERVTVRMAR SDRRTPWGFG VTEAPDGAVL IVNVIGGSLA DRAGLRNGDV VDRLEDLDNL  60
   61 DINAVDRLLV TAHEKIELIV TRQPSGAATR IWRPEVTENT GPGQDQTPYR VNLQHSSDTR 120
  121 PPQGFNNSAL PFETDQRVKH MQYNSPLGIY SDKSAAEQYV QQTQGLGDNS GARAAAQRQD 180
  181 EPAYLRSETL RLLKEQEHGS AGGAGTTLSN HPNPSGLPVC FMCTRPILGV MARAAGKNLH 240
  241 GDCLSCATCG NSLRNVGHHF IEDKFYCDIH GTQRKHGGRP GMDPNIFVKS SPTAAQPVHI 300
  301 QDSPRAAYHP QVNTARPVSV SPAPSAGSKT VTTHYHTPKT QGILSPGQRG VPTAAFGADL 360
  361 SKSVTYGGGV GPGGTHYDSN RLSPAPSQYS TQSRNQSQQH YQQHVVQAPP PVPSNPPPSN 420
  421 DTTAEDSRNF LASRLGQVMI DENKKAGGSN GSSQHHNQQG SSYTKTSFER TTTETRPQQN 480
  481 TGAPRAGDFR GTGHLTTTTT TQQNGGRAPF CESCKQQIRG AFVLATGKSW CPEHFVCANS 540
  541 SCRRRLLECG FVEEDGQKFC ESCFEQHIAP RCNKCSKPII SDCLNALQKK WHPTCFTCAH 600
  601 CQKPFGNSAF YLEQGLPYCE QDWNALFTTK CVSCRYPIEA GDRWVEALGN AFHSNCFTCA 660
  661 RCNHNLEGES FFAKNGQPFC RLHA

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

No functions predicted.

Term	Confidence	Notes
actin binding	3.16654971622305	bayes_pls_golite062009
binding	2.6699388818827	bayes_pls_golite062009
cytoskeletal protein binding	2.30646484446275	bayes_pls_golite062009
actin filament binding	1.88094478345266	bayes_pls_golite062009
transcription regulator activity	1.80598348040519	bayes_pls_golite062009
DNA binding	1.58803093726843	bayes_pls_golite062009
nucleic acid binding	1.40621128284718	bayes_pls_golite062009
protein binding	1.20339329058617	bayes_pls_golite062009
transcription factor activity	1.01977665301102	bayes_pls_golite062009
receptor activity	1.00000843633623	bayes_pls_golite062009
transporter activity	0.893102092384062	bayes_pls_golite062009
signal transducer activity	0.73994900849782	bayes_pls_golite062009
molecular transducer activity	0.73994900849782	bayes_pls_golite062009
transmembrane transporter activity	0.7072042577999	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.524388539161846	bayes_pls_golite062009
substrate-specific transporter activity	0.489535882040485	bayes_pls_golite062009
ligand-dependent nuclear receptor activity	0.464305581802767	bayes_pls_golite062009
sequence-specific DNA binding	0.296594390687774	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.256518766904171	bayes_pls_golite062009
myosin binding	0.184990294745195	bayes_pls_golite062009
transcription activator activity	0.176489516931245	bayes_pls_golite062009
transcription factor binding	0.0944194708411399	bayes_pls_golite062009

No functions predicted.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.83

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..84]	PSI-BLAST	15.522879	No description for 2uzcA was found.
2	View Details	[85..200]	FFAS03	3.22	Cysteine-rich (intestinal) protein, CRP, CRIP
3	View Details	[201..418]	FFAS03	3.3	No description for 2dfyX was found.
4	View Details	[419..489]	PSI-BLAST	11.30103	Five-finger GLI1
5	View Details	[490..684]	PSI-BLAST	43.09691	No description for 2i13A was found.

Protein Overview: alp-1

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: