| Protein: | alp-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 684 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alp-1.
| Description | E-value | Query Range |
Subject Range |
|
|
624.0 | [0..57] | [683..595] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MERVTVRMAR SDRRTPWGFG VTEAPDGAVL IVNVIGGSLA DRAGLRNGDV VDRLEDLDNL 60
61 DINAVDRLLV TAHEKIELIV TRQP
|
| Detection Method: |  |
| Confidence: | 15.522879 |
| Match: | 2uzcA |
| Description: | No description for 2uzcA was found. |
|
Region A: Residues: [85-200] |
1 11 21 31 41 51
| | | | | |
1 SGAATRIWRP EVTENTGPGQ DQTPYRVNLQ HSSDTRPPQG FNNSALPFET DQRVKHMQYN 60
61 SPLGIYSDKS AAEQYVQQTQ GLGDNSGARA AAQRQDEPAY LRSETLRLLK EQEHGS
|
| Detection Method: | |
| Confidence: | 3.22 |
| Match: | 1b8tA |
| Description: | Cysteine-rich (intestinal) protein, CRP, CRIP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 3.16654971622305 | bayes_pls_golite062009 |
| binding | 2.6699388818827 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.30646484446275 | bayes_pls_golite062009 |
| actin filament binding | 1.88094478345266 | bayes_pls_golite062009 |
| transcription regulator activity | 1.80598348040519 | bayes_pls_golite062009 |
| DNA binding | 1.58803093726843 | bayes_pls_golite062009 |
| nucleic acid binding | 1.40621128284718 | bayes_pls_golite062009 |
| protein binding | 1.20339329058617 | bayes_pls_golite062009 |
| transcription factor activity | 1.01977665301102 | bayes_pls_golite062009 |
| receptor activity | 1.00000843633623 | bayes_pls_golite062009 |
| transporter activity | 0.893102092384062 | bayes_pls_golite062009 |
| signal transducer activity | 0.73994900849782 | bayes_pls_golite062009 |
| molecular transducer activity | 0.73994900849782 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.7072042577999 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.524388539161846 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.489535882040485 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 0.464305581802767 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.296594390687774 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.256518766904171 | bayes_pls_golite062009 |
| myosin binding | 0.184990294745195 | bayes_pls_golite062009 |
| transcription activator activity | 0.176489516931245 | bayes_pls_golite062009 |
| transcription factor binding | 0.0944194708411399 | bayes_pls_golite062009 |
|
Region A: Residues: [201-418] |
1 11 21 31 41 51
| | | | | |
1 AGGAGTTLSN HPNPSGLPVC FMCTRPILGV MARAAGKNLH GDCLSCATCG NSLRNVGHHF 60
61 IEDKFYCDIH GTQRKHGGRP GMDPNIFVKS SPTAAQPVHI QDSPRAAYHP QVNTARPVSV 120
121 SPAPSAGSKT VTTHYHTPKT QGILSPGQRG VPTAAFGADL SKSVTYGGGV GPGGTHYDSN 180
181 RLSPAPSQYS TQSRNQSQQH YQQHVVQAPP PVPSNPPP
|
| Detection Method: | |
| Confidence: | 3.3 |
| Match: | 2dfyX |
| Description: | No description for 2dfyX was found. |
|
Region A: Residues: [419-489] |
1 11 21 31 41 51
| | | | | |
1 SNDTTAEDSR NFLASRLGQV MIDENKKAGG SNGSSQHHNQ QGSSYTKTSF ERTTTETRPQ 60
61 QNTGAPRAGD F
|
| Detection Method: | |
| Confidence: | 11.30103 |
| Match: | 2gliA |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [490-684] |
1 11 21 31 41 51
| | | | | |
1 RGTGHLTTTT TTQQNGGRAP FCESCKQQIR GAFVLATGKS WCPEHFVCAN SSCRRRLLEC 60
61 GFVEEDGQKF CESCFEQHIA PRCNKCSKPI ISDCLNALQK KWHPTCFTCA HCQKPFGNSA 120
121 FYLEQGLPYC EQDWNALFTT KCVSCRYPIE AGDRWVEALG NAFHSNCFTC ARCNHNLEGE 180
181 SFFAKNGQPF CRLHA
|
| Detection Method: | |
| Confidence: | 43.09691 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
