YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: alp-1

General Information:
Name(s) found: alp-1 / CE39401 [WormBase]
Description(s) found:
Found 13 descriptions.
SHOW ALL
  • WBGene00001132 locus:alp-1 status:Confirmed UniProt:G5EFG1 protein_id:CAJ43909.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 684 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pharyngeal pumping [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    determination of adult lifespan [IMPLink to PubMed article]
    Molecular Function: zinc ion binding [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERVTVRMAR SDRRTPWGFG VTEAPDGAVL IVNVIGGSLA DRAGLRNGDV VDRLEDLDNL  60
   61 DINAVDRLLV TAHEKIELIV TRQPSGAATR IWRPEVTENT GPGQDQTPYR VNLQHSSDTR 120
  121 PPQGFNNSAL PFETDQRVKH MQYNSPLGIY SDKSAAEQYV QQTQGLGDNS GARAAAQRQD 180
  181 EPAYLRSETL RLLKEQEHGS AGGAGTTLSN HPNPSGLPVC FMCTRPILGV MARAAGKNLH 240
  241 GDCLSCATCG NSLRNVGHHF IEDKFYCDIH GTQRKHGGRP GMDPNIFVKS SPTAAQPVHI 300
  301 QDSPRAAYHP QVNTARPVSV SPAPSAGSKT VTTHYHTPKT QGILSPGQRG VPTAAFGADL 360
  361 SKSVTYGGGV GPGGTHYDSN RLSPAPSQYS TQSRNQSQQH YQQHVVQAPP PVPSNPPPSN 420
  421 DTTAEDSRNF LASRLGQVMI DENKKAGGSN GSSQHHNQQG SSYTKTSFER TTTETRPQQN 480
  481 TGAPRAGDFR GTGHLTTTTT TQQNGGRAPF CESCKQQIRG AFVLATGKSW CPEHFVCANS 540
  541 SCRRRLLECG FVEEDGQKFC ESCFEQHIAP RCNKCSKPII SDCLNALQKK WHPTCFTCAH 600
  601 CQKPFGNSAF YLEQGLPYCE QDWNALFTTK CVSCRYPIEA GDRWVEALGN AFHSNCFTCA 660
  661 RCNHNLEGES FFAKNGQPFC RLHA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..84] PSI-BLAST 15.522879 No description for 2uzcA was found.
    2 View Details [85..200] FFAS03 3.22 Cysteine-rich (intestinal) protein, CRP, CRIP
    3 View Details [201..418] FFAS03 3.3 No description for 2dfyX was found.
    4 View Details [419..489] PSI-BLAST 11.30103 Five-finger GLI1
    5 View Details [490..684] PSI-BLAST 43.09691 No description for 2i13A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • actin binding
    		•  3.16654971622305 bayes_pls_golite062009
  • binding
    		•  2.6699388818827 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.30646484446275 bayes_pls_golite062009
  • actin filament binding
    		•  1.88094478345266 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.80598348040519 bayes_pls_golite062009
  • DNA binding
    		•  1.58803093726843 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.40621128284718 bayes_pls_golite062009
  • protein binding
    		•  1.20339329058617 bayes_pls_golite062009
  • transcription factor activity
    		•  1.01977665301102 bayes_pls_golite062009
  • receptor activity
    		•  1.00000843633623 bayes_pls_golite062009
  • transporter activity
    		•  0.893102092384062 bayes_pls_golite062009
  • signal transducer activity
    		•  0.73994900849782 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.73994900849782 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.7072042577999 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.524388539161846 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.489535882040485 bayes_pls_golite062009
  • ligand-dependent nuclear receptor activity
    		•  0.464305581802767 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.296594390687774 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.256518766904171 bayes_pls_golite062009
  • myosin binding
    		•  0.184990294745195 bayes_pls_golite062009
  • transcription activator activity
    		•  0.176489516931245 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0944194708411399 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle