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Protein Overview: SO3532

General Information:
Name(s) found: SO3532 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
Found 5 descriptions.
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  • isoleucyl-tRNA synthetase [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 940 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDYKFTLNL PETEFPMRGN LANREPEMLE RWTKDGLYQQ IRDSRIGRTP FILHDGPPYA  60
   61 NGSIHIGHSV NKILKDIIVK SKTMSGFDAP YVPGWDCHGL PIELKVEQKV GKPGQKISAA 120
  121 EFREECRKYA AEQVDGQRED FIRLGVLGDW QNPYLTMDFA TEANIVRSLS KVIENGHLHK 180
  181 GVKPVHWCTD CGSALAEAEV EYEDKTSPAI DVAFTAVDSK AVAVKFGVSD YSHSVSMVIW 240
  241 TTTPWTLPAN RALSISPELD YSLVEFVKDG VTHAVILADV LVEACMTRYG AESHSVLAKI 300
  301 KGAALELVRF KHPFLAFDVP AILGDHVTTD AGTGVVHTAP GHGQDDFVVG QKYGLEVANP 360
  361 VGDNGVYKPD TEFFAGQHVF KANDNVVALL KEKGALLHHV AYRHSYPHCW RHKTPIIFRA 420
  421 TPQWFISMDN HNLRKQALSE IEQIQWIPDW GQSRIEKMVE NRPDWCISRQ RTWGVPITLF 480
  481 VHRETEELHP DSVSLMARVA NRIEQEGIQA WWDLDAAELL GEEAEQYRKV TDTLDVWYDS 540
  541 GSTFASVVAA RPEFHGHGVD LYLEGSDQHR GWFMSSLMIS TAMTGKAPYK QVLTHGFTVD 600
  601 GKGRKMSKSI GNVIAPQQVT NKLGADILRL WVAATDYSGE MTVSDEILNR SADAYRRIRN 660
  661 TARFLLANLN GFDPKNDLVA VEDMVALDRW AVRRAAALQQ EIIEAYEQYN FHIVTQKLMQ 720
  721 FCSIELGSFY LDIIKDRQYT AKQEGHARRS CQSALFHIAE AMVRWIAPVL SFTADEVWQL 780
  781 LPGQRDAYVF TQEWYQGLQS ITLDTDLSDA YWENLLTVRN EVNKVIEQAR RDKRVGGSLE 840
  841 AEVTLFADAT LTEQLTHIGD ELRFVLLTSE AKVLPLVDAT SDAVETELAS LKLVVNATTA 900
  901 EKCERCWHHR EEVGTIEAHP TLCHRCVTNI EGDGEVRLFA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..940] PSI-BLAST 1000.0 Isoleucyl-tRNA synthetase (IleRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • valine-tRNA ligase activity
    		•  7.13767629265822 bayes_pls_golite062009
  • leucine-tRNA ligase activity
    		•  7.03538514482698 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
    		•  6.38633897147986 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.56893064485672 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  1.50161401062914 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.625793556381714 bayes_pls_golite062009
  • binding
    		•  0.485102284225571 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.449504767632354 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.2293846471193 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle