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Protein Overview: CE39301

General Information:
Name(s) found: CE39301 [WormBase]
Description(s) found:
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  • WBGene00013407 status:Confirmed UniProt:G5EF48 protein_id:CAA21712.2 [WormBase]
  • gi|82465328|emb|CAA21712.2| C. elegans protein Y63D3A.8, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|82465311|emb|CAB04553.2| C. elegans protein Y63D3A.8, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|115533789|ref|NP_493466.2| hypothetical protein Y63D3A.8 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE39301 WBGene00013407 status:Partially_confirmed UniProt:Q9XTE6_CAEEL protein_id:CAB04553.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • [wormORF-contam.fasta]
  • CE39301 WBGene00013407 status:Partially_confirmed UniProt:Q9XTE6_CAEEL protein_id:CAB04553.2| [wormORF-contam.fasta]
  • CE39301 WBGene00013407 status:Partially_confirmed TR:Q9XTE6 protein_id:CAA21712.2 [wormpep160-contam.fasta]
  • Hypothetical protein Y63D3A.8 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Y63D3A.8 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE39301 WBGene00013407 status:Partially_confirmed UniProt:Q9XTE6 protein_id:CAB04553.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE39301 WBGene00013407 status:Confirmed UniProt:G5EF48 protein_id:CAA21712.2 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=CELE_Y63D3A.8 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 350 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system [IEALink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed article]
    Molecular Function: sugar:hydrogen symporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQLAELLTD LLGPVPTMFL WVIVSFAFFR ALQFIVRWYL FGKWTWPNFN FFDIRNRIRR  60
   61 RRRGGQEAEN TENPPENEAE AGEQVEQEPE PDSRDLSAIP PNKKWRISNE CVSLFHSVIS 120
  121 GLWAAYALLY YKQLVQDLVN YRCDVAINLV LMSAGYLFHD LVDLLVNEQS ARIIELLFHH 180
  181 VVVLSAFAVT MFFNRFLGVV VFGLLMELNS IFLHSRSLLN LYGVDKKSPS FRIIALLNMV 240
  241 TLFAFRLCVS AYLVYFVVVS IPDLEWYVSI INGLVIASLA STNTVLTYRL LAADGLLGSR 300
  301 RTRRTPAATA ETQVGDVESG PLRTQVEDED HHTIGVQTIH GTTEDATQTV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] PSI-BLAST 6.69897 Solution structure of RSGI RUH-034, a homeodomain from mouse cDNA
    2 View Details [96..200] MSA 2.265994 View MSA. No confident structure predictions are available.
    3 View Details [201..350] MSA 7.263995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  1.62959077995642 bayes_pls_golite062009
  • binding
    		•  1.48969201384255 bayes_pls_golite062009
  • DNA binding
    		•  1.2137926921894 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.02805703044131 bayes_pls_golite062009
  • transcription factor activity
    		•  0.89626527070971 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.06790788268651 bayes_pls_golite062009
  • protein binding
    		•  0.012115247005138 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle