| Protein: | CE39301 |
| Organism: | Caenorhabditis elegans |
| Length: | 350 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39301.
| Description | E-value | Query Range |
Subject Range |
|
|
278.0 | [0..8] | [309..300] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MRQLAELLTD LLGPVPTMFL WVIVSFAFFR ALQFIVRWYL FGKWTWPNFN FFDIRNRIRR 60
61 RRRGGQEAEN TENPPENEAE AGEQVEQEPE PDSRD
|
| Detection Method: |  |
| Confidence: | 6.69897 |
| Match: | 2cqxA |
| Description: | Solution structure of RSGI RUH-034, a homeodomain from mouse cDNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 1.62959077995642 | bayes_pls_golite062009 |
| binding | 1.48969201384255 | bayes_pls_golite062009 |
| DNA binding | 1.2137926921894 | bayes_pls_golite062009 |
| nucleic acid binding | 1.02805703044131 | bayes_pls_golite062009 |
| transcription factor activity | 0.89626527070971 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.06790788268651 | bayes_pls_golite062009 |
| protein binding | 0.012115247005138 | bayes_pls_golite062009 |
|
Region A: Residues: [96-200] |
1 11 21 31 41 51
| | | | | |
1 LSAIPPNKKW RISNECVSLF HSVISGLWAA YALLYYKQLV QDLVNYRCDV AINLVLMSAG 60
61 YLFHDLVDLL VNEQSARIIE LLFHHVVVLS AFAVTMFFNR FLGVV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [201-350] |
1 11 21 31 41 51
| | | | | |
1 VFGLLMELNS IFLHSRSLLN LYGVDKKSPS FRIIALLNMV TLFAFRLCVS AYLVYFVVVS 60
61 IPDLEWYVSI INGLVIASLA STNTVLTYRL LAADGLLGSR RTRRTPAATA ETQVGDVESG 120
121 PLRTQVEDED HHTIGVQTIH GTTEDATQTV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
