YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39301
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQLAELLTD LLGPVPTMFL WVIVSFAFFR ALQFIVRWYL FGKWTWPNFN FFDIRNRIRR  60
   61 RRRGGQEAEN TENPPENEAE AGEQVEQEPE PDSRDLSAIP PNKKWRISNE CVSLFHSVIS 120
  121 GLWAAYALLY YKQLVQDLVN YRCDVAINLV LMSAGYLFHD LVDLLVNEQS ARIIELLFHH 180
  181 VVVLSAFAVT MFFNRFLGVV VFGLLMELNS IFLHSRSLLN LYGVDKKSPS FRIIALLNMV 240
  241 TLFAFRLCVS AYLVYFVVVS IPDLEWYVSI INGLVIASLA STNTVLTYRL LAADGLLGSR 300
  301 RTRRTPAATA ETQVGDVESG PLRTQVEDED HHTIGVQTIH GTTEDATQTV

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.49
Transmembrane Helix	17	41	0.79
Cytoplasmic	42	111	0.75
Transmembrane Helix	112	130	0.88
Non-Cytoplasmic	131	178	0.51
Transmembrane Helix	179	213	0.73
Cytoplasmic	214	233	0.81
Transmembrane Helix	234	256	0.89
Non-Cytoplasmic	257	269	0.74
Transmembrane Helix	270	291	0.90
Cytoplasmic	292	350	0.97