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Protein Overview: gi|6690112

General Information:
Name(s) found: gi|6690112 [NCBI NR]
Description(s) found:
Found 3 descriptions.
SHOW ALL
  • gi|6690112|gb|AAD03740.2| 1-deoxy-D-xylulose 5-phosphate synthase [Plasmodium falciparum] [NCBI NR]
    • Organism: Plasmodium falciparum
    Length: 1205 amino acids

    Gene Ontology:
    Cellular Component: apicoplast [IDALink to PubMed article]
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFNYVFFKN FVPVVLYILL IIYINLNGMN NKNQIKTEKI YIKKLNRLSR KNSLCSSKNK  60
   61 IACLFDIGND DNRNTTYGYN VNVKNDDINS LLKNNYSNKL YMDKRKNINN VISTNKISGS 120
  121 ISNICSRNQK ENEQKRNKQR CLTQCHTYNM SHEQDKLAND NNRNNKKNFN LLFINYFNLK 180
  181 RMKNSLLNKD NFFYCKEKKL SFLHKAYKKK NCTFQNYSLK RKSNRDSHKL FSGEFDDYTN 240
  241 NNALYESEKK EYITLNNNNK NNNNKNNDNK NNDNNDYNNN NSCNNLGERS NHYDNYGGDN 300
  301 NNPCNNNNDK YDIGKYFKQI NTFINIDEYK TIYGDEIYKE IYELYVERNI PEYYERKYFS 360
  361 EDIKKSVLFD IDKYNDVEFE KAIKEEFINN GVYINNIDNT YYKKENILIM KKILHYFPLL 420
  421 KLINNPSDLK KLKKQYLPLL AHELKIFLFF IVNITGGHFS SVLSSLEIQL LLLYIFNQPY 480
  481 DNVIYDIGHQ AYVHKILTGR KLLFLSLRNK KGISGFLNIF ESIYDKFGAG HSSTSLSAIQ 540
  541 GYYEAEWQVK NKEKYGNGDI EISDNANVTN NERIFQKGIH NDNNINNNIN NNNYINPSDV 600
  601 VGRENTNVPN VRNDNHNVDK VHIAIIGDGG LTGGMALEAL NYISFLNSKI LIIYNDNGQV 660
  661 SLPTNAVSIS GNRPIGSISD HLHYFVSNIE ANAGDNKLSK NAKENNIFEN LNYDYIGVVN 720
  721 GNNTEELFKV LNNIKENKLK RATVLHVRTK KSNDFINSKS PISILHSIKK NEIFPFDTTI 780
  781 LNGNIHKENK IEEEKNVSSS TKYDVNNKNN KNNDNSEIIK YEDMFSKETF TDIYTNEMLK 840
  841 YLKKDRNIIF LSPAMLGGSG LVKISERYPN NVYDVGIAEQ HSVTFAAAMA MNKKLKIQLC 900
  901 IYSTFLQRAY DQIIHDLNLQ NIPLKVIIGR SGLVGEDGAT HQGIYDLSYL GTLNNAYIIS 960
  961 PSNQVDLKRA LRFAYLDKDH SVYIRIPRMN ILSDKYMKGY LNIHMKNESK NIDVNVDIND1020
 1021 DVDKYSEEYM DDDNFIKSFI GKSRIIKMDN ENNNTNEHYS SRGDTQTKKK KVCIFNMGSM1080
 1081 LFNVINAIKE IEKEQYISHN YSFSIVDMIF LNPLDKNMID HVIKQNKHQY LITYEDNTIG1140
 1141 GFSTHFNNYL IENNYITKHN LYVHNIYLSN EPIEHASFKD QQEVVKMDKC SLVNRIKNYL1200
 1201 KNNPT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..424] PSI-BLAST 12.221849 Botulinum neurotoxin
    2 View Details [425..1127] PSI-BLAST 1000.0 Transketolase (TK), Pyr module; Transketolase (TK), PP module; Transketolase (TK), C-domain
    3 View Details [1128..1205] FFAS03 2.12 No description for 2o1xA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.611141034457968 bayes_pls_golite062009
    2
    Term Confidence Notes
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
    		•  0.620868432332651 bayes_pls_golite062009
  • pyruvate dehydrogenase activity
    		•  0.55206250942129 bayes_pls_golite062009
  • catalytic activity
    		•  0.545407789079971 bayes_pls_golite062009
  • transketolase activity
    		•  0.464887205441183 bayes_pls_golite062009
  • pyruvate dehydrogenase (acetyl-transferring) activity
    		•  0.41381804072744 bayes_pls_golite062009
  • transferase activity, transferring aldehyde or ketonic groups
    		•  0.325877250101845 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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