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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6690112
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFNYVFFKN FVPVVLYILL IIYINLNGMN NKNQIKTEKI YIKKLNRLSR KNSLCSSKNK  60
   61 IACLFDIGND DNRNTTYGYN VNVKNDDINS LLKNNYSNKL YMDKRKNINN VISTNKISGS 120
  121 ISNICSRNQK ENEQKRNKQR CLTQCHTYNM SHEQDKLAND NNRNNKKNFN LLFINYFNLK 180
  181 RMKNSLLNKD NFFYCKEKKL SFLHKAYKKK NCTFQNYSLK RKSNRDSHKL FSGEFDDYTN 240
  241 NNALYESEKK EYITLNNNNK NNNNKNNDNK NNDNNDYNNN NSCNNLGERS NHYDNYGGDN 300
  301 NNPCNNNNDK YDIGKYFKQI NTFINIDEYK TIYGDEIYKE IYELYVERNI PEYYERKYFS 360
  361 EDIKKSVLFD IDKYNDVEFE KAIKEEFINN GVYINNIDNT YYKKENILIM KKILHYFPLL 420
  421 KLINNPSDLK KLKKQYLPLL AHELKIFLFF IVNITGGHFS SVLSSLEIQL LLLYIFNQPY 480
  481 DNVIYDIGHQ AYVHKILTGR KLLFLSLRNK KGISGFLNIF ESIYDKFGAG HSSTSLSAIQ 540
  541 GYYEAEWQVK NKEKYGNGDI EISDNANVTN NERIFQKGIH NDNNINNNIN NNNYINPSDV 600
  601 VGRENTNVPN VRNDNHNVDK VHIAIIGDGG LTGGMALEAL NYISFLNSKI LIIYNDNGQV 660
  661 SLPTNAVSIS GNRPIGSISD HLHYFVSNIE ANAGDNKLSK NAKENNIFEN LNYDYIGVVN 720
  721 GNNTEELFKV LNNIKENKLK RATVLHVRTK KSNDFINSKS PISILHSIKK NEIFPFDTTI 780
  781 LNGNIHKENK IEEEKNVSSS TKYDVNNKNN KNNDNSEIIK YEDMFSKETF TDIYTNEMLK 840
  841 YLKKDRNIIF LSPAMLGGSG LVKISERYPN NVYDVGIAEQ HSVTFAAAMA MNKKLKIQLC 900
  901 IYSTFLQRAY DQIIHDLNLQ NIPLKVIIGR SGLVGEDGAT HQGIYDLSYL GTLNNAYIIS 960
  961 PSNQVDLKRA LRFAYLDKDH SVYIRIPRMN ILSDKYMKGY LNIHMKNESK NIDVNVDIND1020
 1021 DVDKYSEEYM DDDNFIKSFI GKSRIIKMDN ENNNTNEHYS SRGDTQTKKK KVCIFNMGSM1080
 1081 LFNVINAIKE IEKEQYISHN YSFSIVDMIF LNPLDKNMID HVIKQNKHQY LITYEDNTIG1140
 1141 GFSTHFNNYL IENNYITKHN LYVHNIYLSN EPIEHASFKD QQEVVKMDKC SLVNRIKNYL1200
 1201 KNNPT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle