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Protein Overview: gi|125590511, gi...

General Information:
Name(s) found: gi|50924558 [NCBI NR]
gi|38344584 [NCBI NR]
gi|38344536 [NCBI NR]
gi|215694007 [NCBI NR]
gi|125590511 [NCBI NR]
gi|115458588 [NCBI NR]
gi|113564465 [NCBI NR]
Description(s) found:
Found 11 descriptions.
SHOW ALL
  • gi|50924558|ref|XP_472639.1| OSJNBa0058G03.7 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|38344584|emb|CAE02431.2| OSJNBa0058G03.7 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|38344536|emb|CAE02442.2| OSJNBa0027P08.4 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|215694007|dbj|BAG89206.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|125590511|gb|EAZ30861.1| hypothetical protein OsJ_14933 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115458588|ref|NP_001052894.1| Os04g0444600 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113564465|dbj|BAF14808.1| Os04g0444600 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 425 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSMESSYLP ATTESIAKAQ EAKDASESIS ILYRVLQDPS SSAEALRTKE LAITNLTNYL  60
   61 TKENRAEELR NLLTQLRPFF SLIPKAKTAK IVRGIIDAVA KIPGTSELQI SLCKEMVEWT 120
  121 RAEKRTFLRQ RVEARLAALL LENQEYTEAL TLLTGLIKEV RRLDDKLLLV DIDLLESKLH 180
  181 FSLRNLPKAK ASLTAARTAA NAIYVPPAQQ GTIDLQSGIL HAEEKDYKTA YSYFFEAFEA 240
  241 FSALEDPKAI FSLKYMLLCK IMVNQADDVA GIISSKAGLK YLGPDVDAMK AVADAYSKRS 300
  301 LKYFETALRD YKSQLEEDPI VHRHLSSLYD TLLEQNLCRL IEPYSRVEIA HIAEMIELPV 360
  361 DHVEKKLSQM ILDKKFAGTL DQGAGCLIIF EDPKTEAIFP ATLETISNVG KVVDSLYMRS 420
  421 AKIMA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..240] PSI-BLAST 8.30103 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    2 View Details [241..315] deduced N/A No confident structure predictions are available.
    3 View Details [316..425] PSI-BLAST 8.30103 Solution structure of the PCI domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity
    		•  2.78419126863783 bayes_pls_golite062009
  • binding
    		•  2.52126334054344 bayes_pls_golite062009
  • protein binding
    		•  1.52807685989528 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.532407342912695 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.476530460247536 bayes_pls_golite062009
  • enzyme binding
    		•  0.44905827271946 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.41706917101675 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.322371143360832 bayes_pls_golite062009
  • DNA binding
    		•  0.17736976899009 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  3.50995556050336 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.38144578566524 bayes_pls_golite062009
  • binding
    		•  3.33026160538031 bayes_pls_golite062009
  • DNA binding
    		•  3.30822066787723 bayes_pls_golite062009
  • transcription factor activity
    		•  2.60537570879007 bayes_pls_golite062009
  • hydrolase activity
    		•  2.30467124306022 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.32971938164691 bayes_pls_golite062009
  • transcription activator activity
    		•  1.08566311616647 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.95491822926452 bayes_pls_golite062009
  • protein binding
    		•  0.653872239015235 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.42135864069093 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.136726704233672 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.118016217031359 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle