| Protein: | gi|125590511, gi... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 425 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125590511, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
232.0 | [0..4] | [411..1] |
|
Region A: Residues: [1-240] |
1 11 21 31 41 51
| | | | | |
1 MSSMESSYLP ATTESIAKAQ EAKDASESIS ILYRVLQDPS SSAEALRTKE LAITNLTNYL 60
61 TKENRAEELR NLLTQLRPFF SLIPKAKTAK IVRGIIDAVA KIPGTSELQI SLCKEMVEWT 120
121 RAEKRTFLRQ RVEARLAALL LENQEYTEAL TLLTGLIKEV RRLDDKLLLV DIDLLESKLH 180
181 FSLRNLPKAK ASLTAARTAA NAIYVPPAQQ GTIDLQSGIL HAEEKDYKTA YSYFFEAFEA 240
241
|
| Detection Method: |  |
| Confidence: | 8.30103 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrolase activity | 2.78419126863783 | bayes_pls_golite062009 |
| binding | 2.52126334054344 | bayes_pls_golite062009 |
| protein binding | 1.52807685989528 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.532407342912695 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.476530460247536 | bayes_pls_golite062009 |
| enzyme binding | 0.44905827271946 | bayes_pls_golite062009 |
| nucleic acid binding | 0.41706917101675 | bayes_pls_golite062009 |
| transcription regulator activity | 0.322371143360832 | bayes_pls_golite062009 |
| DNA binding | 0.17736976899009 | bayes_pls_golite062009 |
|
Region A: Residues: [241-315] |
1 11 21 31 41 51
| | | | | |
1 FSALEDPKAI FSLKYMLLCK IMVNQADDVA GIISSKAGLK YLGPDVDAMK AVADAYSKRS 60
61 LKYFETALRD YKSQL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [316-425] |
1 11 21 31 41 51
| | | | | |
1 EEDPIVHRHL SSLYDTLLEQ NLCRLIEPYS RVEIAHIAEM IELPVDHVEK KLSQMILDKK 60
61 FAGTLDQGAG CLIIFEDPKT EAIFPATLET ISNVGKVVDS LYMRSAKIMA
|
| Detection Method: | |
| Confidence: | 8.30103 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.50995556050336 | bayes_pls_golite062009 |
| nucleic acid binding | 3.38144578566524 | bayes_pls_golite062009 |
| binding | 3.33026160538031 | bayes_pls_golite062009 |
| DNA binding | 3.30822066787723 | bayes_pls_golite062009 |
| transcription factor activity | 2.60537570879007 | bayes_pls_golite062009 |
| hydrolase activity | 2.30467124306022 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.32971938164691 | bayes_pls_golite062009 |
| transcription activator activity | 1.08566311616647 | bayes_pls_golite062009 |
| transcription repressor activity | 0.95491822926452 | bayes_pls_golite062009 |
| protein binding | 0.653872239015235 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.42135864069093 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.118016217031359 | bayes_pls_golite062009 |
