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Protein Overview: gi|30264150, gi|...

General Information:
Name(s) found: gi|30264150 [NCBI NR]
gi|30258795 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|30264150|ref|NP_846527.1| sporulation sigma factor SigF [Bacillus anthracis str. Ames] [NCBI NR]
  • gi|30258795|gb|AAP28013.1| RNA polymerase sigma-F factor [Bacillus anthracis str. Ames] [NCBI NR]
    • Organism: Bacillus anthracis str. Ames
    Length: 252 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: asexual sporulation [ISSLink to PubMed article]
    transcription initiation [ISSLink to PubMed article]
    Molecular Function: sigma factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIEVKNEKK KPQLKDHELK ALIQKSQDGD QQARDTIVQS NMRLVWSVVQ RFLNRGYEPD  60
   61 DLFQIGCIGL LKSVDKFDLS FDVKFSTYAV PMIIGEIQRF LRDDGSVKVS RSLKETGNKI 120
  121 RKMRDELSKE FGRAPTINEV AEALELTPEE VVLAQEASRA PSSIHETVYE NDGDPITILD 180
  181 QIADQSETKW FDKIALKEAI RELDERERLI VYLRYYKDQT QSEVAERIGI SQVQVSRLEK 240
  241 KILKQMKDRI DE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..252] PSI-BLAST 32.39794 SigmaF

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription initiation factor activity
    		•  5.78609205758337 bayes_pls_golite062009
  • sigma factor activity
    		•  5.64833683794078 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.74356768143558 bayes_pls_golite062009
  • binding
    		•  0.548757434020842 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle