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Protein Overview: gi|119612942, gi...

General Information:
Name(s) found: gi|54234024 [NCBI NR]
gi|46250447 [NCBI NR]
gi|33320680 [NCBI NR]
gi|14280050 [NCBI NR]
gi|119612944 [NCBI NR]
gi|119612942 [NCBI NR]
Description(s) found:
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  • gi|54234024|ref|NP_056104.2| vacuolar protein sorting 39 [Homo sapiens] [NCBI NR]
  • gi|46250447|gb|AAH68559.1| Vacuolar protein sorting 39 homolog (S. cerevisiae) [Homo sapiens] [NCBI NR]
  • gi|33320680|gb|AAQ05978.1|AF281052_1 VPS39 [Homo sapiens] [NCBI NR]
  • gi|14280050|gb|AAK58862.1| Vps39/Vam6-like protein [Homo sapiens] [NCBI NR]
  • gi|119612944|gb|EAW92538.1| vacuolar protein sorting 39 (yeast), isoform CRA_b [Homo sapiens] [NCBI NR]
  • gi|119612942|gb|EAW92536.1| vacuolar protein sorting 39 (yeast), isoform CRA_b [Homo sapiens] [NCBI NR]
  • vacuolar protein sorting 39 [Homo sapiens]gi|46250447|gb|AAH68559.1| Vacuolar protein sorting 39 [Homo sapiens]gi|14280050|gb|AAK58862.1| Vps39/Vam6-like protein [Homo sapiens]gi|33320680|gb|AAQ05978.1| VPS39 [Homo sapiens] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=9606 Splice Isoform 2 of Vam6/Vps39-like protein [EBI-IPI_human_3.17_05-09-2006_con_reversed.fasta]
  • vacuolar protein sorting 39 [Homo sapiens] [NCBI-RefSeq_Human_na_12_06_2006_con_reversed.fasta]
  • Vacuolar protein sorting 39 homolog (S. cerevisiae) [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • vacuolar protein sorting 39 (yeast), isoform CRA_b [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • VPS39 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Vps39/Vam6-like protein [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Tax_Id=9606 Isoform 2 of Vam6/Vps39-like protein [EBI-IPI_human_3.23_11-02-2006_con_reversed.fasta]
  • Tax_Id=9606 VPS39 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=9606 Gene_Symbol=VPS39 Isoform 2 of Vam6/Vps39-like protein [human-ipi-250309-contam.fasta]
  • Vacuolar protein sorting 39 (yeast) [Homo sapiens] [nr-271106-contam.fasta]
  • IPI:IPI00332744.2|SWISS-PROT:Q96JC1-2|TREMBL:B3KY10|ENSEMBL:ENSP00000326534|REFSEQ:NP_056104|H-INV:HIT000242859|VEGA:OTTHUMP00000161027 Tax_Id=9606 Gene_Symbol=VPS39 Isoform 2 of Vam6/Vps39-like protein [ipi.HUMAN.fasta.20090807]
  • [human_BMb_040710_contam.fasta]
  • vam6/Vps39-like protein [Homo sapiens] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • Isoform 2 of Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 [011711_HMR.fasta]
  • GeneSymbol=VPS39 Synonyms=FLJ21681|FLJ46546|KIAA0770|TLP|VAM6|hVam6p vam6/Vps39-like protein [Homo sapiens] [NCBI-RefSeq_Human_Seno_07-12-2011_reversed.fasta]
  • Isoform 2 of Vam6/Vps39-like protein GN=VPS39 [Doctor+uniprot-HUMAN-120911.fasta]
  • Vacuolar protein sorting 39 (Yeast), isoform CRA_b OS=Homo sapiens GN=VPS39 PE=4 SV=1 [uniprot-human-031015-contam.fasta]
  • Isoform of Q96JC1, Isoform 2 of Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 [2016-04-human-contam-aPKC-His-Par6.fasta]
    • Organism: Homo sapiens
    Length: 875 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDAFEPVPI LEKLPLQIDC LAAWEEWLLV GTKQGHLLLY RIRKDVGCNR FEVTLEKSNK  60
   61 NFSKKIQQIH VVSQFKILVS LLENNIYVHD LLTFQQITTV SKAKGASLFT CDLQHTETGE 120
  121 EVLRMCVAVK KKLQLYFWKD REFHELQGDF SVPDVPKSMA WCENSICVGF KRDYYLIRVD 180
  181 GKGSIKELFP TGKQLEPLVA PLADGKVAVG QDDLTVVLNE EGICTQKCAL NWTDIPVAME 240
  241 HQPPYIIAVL PRYVEIRTFE PRLLVQSIEL QRPRFITSGG SNIIYVASNH FVWRLIPVPM 300
  301 ATQIQQLLQD KQFELALQLA EMKDDSDSEK QQQIHHIKNL YAFNLFCQKR FDESMQVFAK 360
  361 LGTDPTHVMG LYPDLLPTDY RKQLQYPNPL PVLSGAELEK AHLALIDYLT QKRSQLVKKL 420
  421 NDSDHQSSTS PLMEGTPTIK SKKKLLQIID TTLLKCYLHT NVALVAPLLR LENNHCHIEE 480
  481 SEHVLKKAHK YSELIILYEK KGLHEKALQV LVDQSKKANS PLKGHERTVQ YLQHLGTENL 540
  541 HLIFSYSVWV LRDFPEDGLK IFTEDLPEVE SLPRDRVLGF LIENFKGLAI PYLEHIIHVW 600
  601 EETGSRFHNC LIQLYCEKVQ GLMKEYLLSF PAGKTPVPAG EEEGELGEYR QKLLMFLEIS 660
  661 SYYDPGRLIC DFPFDGLLEE RALLLGRMGK HEQALFIYVH ILKDTRMAEE YCHKHYDRNK 720
  721 DGNKDVYLSL LRMYLSPPSI HCLGPIKLEL LEPKANLQAA LQVLELHHSK LDTTKALNLL 780
  781 PANTQINDIR IFLEKVLEEN AQKKRFNQVL KNLLHAEFLR VQEERILHQQ VKCIITEEKV 840
  841 CMVCKKKIGN SAFARYPNGV VVHYFCSKEV NPADT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..212] FFAS03 2.92 Tup1, C-terminal domain
    2 View Details [213..875] PSI-BLAST 75.30103 Clathrin D6 Coat

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.38386546684697 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.36560618519891 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.99673640585547 bayes_pls_golite062009
  • DNA binding
    		•  1.74970945772818 bayes_pls_golite062009
  • transporter activity
    		•  1.23232041140488 bayes_pls_golite062009
  • protein binding
    		•  1.14503622489775 bayes_pls_golite062009
  • transcription factor activity
    		•  1.10790917305704 bayes_pls_golite062009
  • receptor activity
    		•  0.985978971632527 bayes_pls_golite062009
  • signal transducer activity
    		•  0.786039867308269 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.786039867308269 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.750051725890322 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.561205988591905 bayes_pls_golite062009
  • transcription factor binding
    		•  0.421428497325728 bayes_pls_golite062009
  • hydrolase activity
    		•  0.346903609858078 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.271959658140432 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.203779337313278 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.0245411309982146 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.00328955300255629 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle