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Protein Overview: gi|34098883, gi|...

General Information:
Name(s) found: gi|34098883 [NCBI NR]
gi|20466336 [NCBI NR]
gi|18408755 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|34098883|gb|AAQ56824.1| At3g49000 [Arabidopsis thaliana] [NCBI NR]
  • gi|20466336|gb|AAM20485.1| RNA polymerase III subunit-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18408755|ref|NP_566914.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 523 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: transcription [IEA]
    Molecular Function: DNA binding [IEA]
    DNA-directed RNA polymerase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSEFGIVY AIHIITVQFG SVVSKVCECL LRKGPLSSRD ISRLAESDIN HNKVKDILYL  60
   61 LIQHNCVQAF SIEPPDGSES KAIVQYIVLF NNILHRVRYN KFSRIVNEEL DSKCGAVLDG 120
  121 LLSNGRLTLG QFIERDRDSG NTIGSEAIRD SLQKLVAARF VERIPSPEPV LGNKEKEPAK 180
  181 RRGAKAAKIL KEPETLEEQV VEAATPVDAI RFPLIFEEDS NSSLADDNSN ITEGKRKQRD 240
  241 VDTSDSSSGV IWRPNFEEFI HRLRHKACVE IVKERRDEGC AIVLRAMLEV GRSQEKKVKT 300
  301 DNSAPMSVGS IYEEVIKTEA GRTMLQERVE ACLDQLSATS SYLPAFVNEV NDSYIVDYKS 360
  361 IISVAQKDEI EAVVMRRYGK EAFRMFRYLS QEGRFVETDK IADAALTEKK DTPQFLLKMW 420
  421 KDGYLHMQKL AVTAPGMYTP FLLWKVNKLI VTTQMLDEMY HASLNLSLRL AHELEAEKEL 480
  481 LLLPLDKLEG PLKERLKKVK AKRLLLSSTM FKLDDAIMLF HDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..124] Pfam 22.387216 No description for PF08221.2 was found. No confident structure predictions are available.
    2 View Details [125..307] deduced N/A No confident structure predictions are available.
    3 View Details [308..488] FFAS03 1.83 An extended winged helix domain in general transcription factor E/IIE alpha
    4 View Details [489..523] MSA 1.030993 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  5.23858959608048 bayes_pls_golite062009
  • DNA binding
    		•  4.78517210147551 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.72059012764202 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  4.34522534923857 bayes_pls_golite062009
  • RNA polymerase activity
    		•  4.34522534923857 bayes_pls_golite062009
  • transcription factor activity
    		•  4.02736190679869 bayes_pls_golite062009
  • binding
    		•  3.37660003833383 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  2.82260867370675 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.21432668306508 bayes_pls_golite062009
  • transferase activity
    		•  2.21031006146354 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.16473039675898 bayes_pls_golite062009
  • transcription activator activity
    		•  2.13702350917359 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.9708626903609 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.50332889556988 bayes_pls_golite062009
  • transcription factor binding
    		•  0.752335897765285 bayes_pls_golite062009
  • protein binding
    		•  0.726445167461826 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.451714629708561 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle