| Protein: | gi|34098883, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 523 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34098883, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
575.0 | [0..3] | [523..1] |
|
Region A: Residues: [1-124] |
1 11 21 31 41 51
| | | | | |
1 MSMSEFGIVY AIHIITVQFG SVVSKVCECL LRKGPLSSRD ISRLAESDIN HNKVKDILYL 60
61 LIQHNCVQAF SIEPPDGSES KAIVQYIVLF NNILHRVRYN KFSRIVNEEL DSKCGAVLDG 120
121 LLSN
|
| Detection Method: |  |
| Confidence: | 22.387216 |
| Match: | PF08221.2 |
| Description: | No description for PF08221.2 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [125-307] |
1 11 21 31 41 51
| | | | | |
1 GRLTLGQFIE RDRDSGNTIG SEAIRDSLQK LVAARFVERI PSPEPVLGNK EKEPAKRRGA 60
61 KAAKILKEPE TLEEQVVEAA TPVDAIRFPL IFEEDSNSSL ADDNSNITEG KRKQRDVDTS 120
121 DSSSGVIWRP NFEEFIHRLR HKACVEIVKE RRDEGCAIVL RAMLEVGRSQ EKKVKTDNSA 180
181 PMS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [308-488] |
1 11 21 31 41 51
| | | | | |
1 VGSIYEEVIK TEAGRTMLQE RVEACLDQLS ATSSYLPAFV NEVNDSYIVD YKSIISVAQK 60
61 DEIEAVVMRR YGKEAFRMFR YLSQEGRFVE TDKIADAALT EKKDTPQFLL KMWKDGYLHM 120
121 QKLAVTAPGM YTPFLLWKVN KLIVTTQMLD EMYHASLNLS LRLAHELEAE KELLLLPLDK 180
181 L
|
| Detection Method: | |
| Confidence: | 1.83 |
| Match: | 1q1hA |
| Description: | An extended winged helix domain in general transcription factor E/IIE alpha |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.23858959608048 | bayes_pls_golite062009 |
| DNA binding | 4.78517210147551 | bayes_pls_golite062009 |
| nucleic acid binding | 4.72059012764202 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 4.34522534923857 | bayes_pls_golite062009 |
| RNA polymerase activity | 4.34522534923857 | bayes_pls_golite062009 |
| transcription factor activity | 4.02736190679869 | bayes_pls_golite062009 |
| binding | 3.37660003833383 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 2.82260867370675 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.21432668306508 | bayes_pls_golite062009 |
| transferase activity | 2.21031006146354 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 2.16473039675898 | bayes_pls_golite062009 |
| transcription activator activity | 2.13702350917359 | bayes_pls_golite062009 |
| transcription repressor activity | 1.9708626903609 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.50332889556988 | bayes_pls_golite062009 |
| transcription factor binding | 0.752335897765285 | bayes_pls_golite062009 |
| protein binding | 0.726445167461826 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.451714629708561 | bayes_pls_golite062009 |
|
Region A: Residues: [489-523] |
1 11 21 31 41 51
| | | | | |
1 EGPLKERLKK VKAKRLLLSS TMFKLDDAIM LFHDF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
