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Protein Overview: RR12_ARATH

General Information:
Name(s) found: RR12_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7525080|ref|NP_051037.1| ribosomal protein S12 [Arabidopsis thaliana] [NCBI NR]
  • gi|7525057|ref|NP_051038.1| ribosomal protein S12 [Arabidopsis thaliana] [NCBI NR]
  • gi|5881741|dbj|BAA84432.1| ribosomal protein S12 [Arabidopsis thaliana] [NCBI NR]
  • gi|5881718|dbj|BAA84409.1| ribosomal protein S12 [Arabidopsis thaliana] [NCBI NR]
  • gi|49065835|sp|P62126.2|RR12_ARATH RecName: Full=30S ribosomal protein S12, chloroplastic [NCBI NR]
  • gi|188036213|pdb|3BBN|L Chain L, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome. [NCBI NR]
  • 30S ribosomal protein S12, chloroplastic OS=Arabidopsis thaliana GN=rps12-A PE=2 SV=2 [Swiss-Prot]
  • ribosomal protein S12 [Arabidopsis thaliana]gi|5881718|dbj|BAA84409.1| ribosomal protein S12 [Arabidopsis thaliana]gi|11497594|ref|NP_054911.1| ribosomal protein S12 [Spinacia oleracea]gi|11497571|ref|NP_054910.1| ribosomal protein S12 [Spinacia olerac [nrdb_11152004_Chlamydomonas]
  • | Symbols: RPS12, RPS12A | chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript. | chrC:69611-69724 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • | Symbols: RPS12, RPS12B | chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript. | chrC:139856-140650 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • | Symbols: RPS12, RPS12C | chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript. | chrC:97999-98793 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ribosomal protein S12 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Chloroplast 30S ribosomal protein S12 [nr-271106-contam.fasta]
  • | Symbols: RPS12A, RPS12 | ribosomal protein S12A | chrC:69611-69724 REVERSE LENGTH=123 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • | Symbols: RPS12B, RPS12 | ribosomal protein S12B | chrC:139856-140650 FORWARD LENGTH=123 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • | Symbols: RPS12C, RPS12 | ribosomal protein S12C | chrC:97999-98793 REVERSE LENGTH=123 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 123 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTIKQLIRN TRQPIRNVTK SPALRGCPQR RGTCTRVYTI TPKKPNSALR KVARVRLTSG  60
   61 FEITAYIPGI GHNLQEHSVV LVRGGRVKDL PGVRYHIVRG TLDAVGVKDR QQGRSKYGVK 120
  121 KPK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..123] PSI-BLAST 51.0 No description for 1vs5L was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  7.45319063235379 bayes_pls_golite062009
  • structural molecule activity
    		•  6.87843523680097 bayes_pls_golite062009
  • misfolded RNA binding
    		•  4.4877915495248 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.63363905192127 bayes_pls_golite062009
  • RNA binding
    		•  3.30183895019873 bayes_pls_golite062009
  • DNA binding
    		•  2.84579720873153 bayes_pls_golite062009
    		• 2.80746531284205 bayes_pls_golite062009
  • binding
    		•  2.40532042551671 bayes_pls_golite062009
  • mRNA binding
    		•  1.65819015373151 bayes_pls_golite062009
  • translation regulator activity
    		•  1.46320772716954 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.40718318783582 bayes_pls_golite062009
  • translation initiation factor activity
    		•  1.27539679024898 bayes_pls_golite062009
  • protein binding
    		•  1.20309946451799 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.1059706841002 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.10289736160471 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.96886436248958 bayes_pls_golite062009
  • transcription factor activity
    		•  0.540940243804807 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.498439111185072 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.474251377131502 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.47336621289748 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.47336621289748 bayes_pls_golite062009
  • transcription activator activity
    		•  0.458219339846021 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.438266295385131 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.39131721416336 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.23198185345804 bayes_pls_golite062009
  • nuclease activity
    		•  0.17660139576327 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.0717589400404304 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle