YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: MCA1_ARATH

General Information:
Name(s) found: MCA1_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|75232683|sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMCP1b; Short=AtMC1; AltName: Full=Protein LSD ONE LIKE 3 [NCBI NR]
  • gi|37788545|gb|AAP44514.1| metacaspase 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|32482812|gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|30678252|ref|NP_171719.2| AMC1 (METACASPASE 1); cysteine-type endopeptidase [Arabidopsis thaliana] [NCBI NR]
  • Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1 [Swiss-Prot]
  • metacaspase 1 [Arabidopsis thaliana]gi|32482812|gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana]gi|30678252|ref|NP_171719.2| latex-abundant family protein (AMC1) / caspase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Metacaspase AtMCP1b [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATMCPB1, MCP1B, AMC1, ATMC1, LOL3 | LOL3 (LSD ONE LIKE 3); caspase/ cysteine-type endopeptidase | chr1:411883-413426 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • LOL3 (LSD ONE LIKE 3); caspase/ cysteine-type endopeptidase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • metacaspase 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 367 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: induction of apoptosis [IDA]
    proteolysis [ISS]
    Molecular Function: cysteine-type endopeptidase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPPPPSSIY APPMLVNCSG CRTPLQLPSG ARSIRCALCQ AVTHIADPRT APPPQPSSAP  60
   61 SPPPQIHAPP GQLPHPHGRK RAVICGISYR FSRHELKGCI NDAKCMRHLL INKFKFSPDS 120
  121 ILMLTEEETD PYRIPTKQNM RMALYWLVQG CTAGDSLVFH YSGHGSRQRN YNGDEVDGYD 180
  181 ETLCPLDFET QGMIVDDEIN ATIVRPLPHG VKLHSIIDAC HSGTVLDLPF LCRMNRAGQY 240
  241 VWEDHRPRSG LWKGTAGGEA ISISGCDDDQ TSADTSALSK ITSTGAMTFC FIQAIERSAQ 300
  301 GTTYGSLLNS MRTTIRNTGN DGGGSGGVVT TVLSMLLTGG SAIGGLRQEP QLTACQTFDV 360
  361 YAKPFTL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..367] PSI-BLAST 10.221849 Crystal Structure of Caspase-1 from Spodoptera frugiperda

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.509020836113671 bayes_pls_golite062009
  • binding
    		•  0.21939605213028 bayes_pls_golite062009
  • hydrolase activity
    		•  0.19112054191813 bayes_pls_golite062009
  • protein binding
    		•  0.08628045338074 bayes_pls_golite062009
  • peptidase activity
    		•  0.06679726457289 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.63

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle