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Protein Overview: gi|30260033, gi|...

General Information:
Name(s) found: gi|30265355 [NCBI NR]
gi|30260033 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|30265355|ref|NP_847732.1| transcription termination factor Rho [Bacillus anthracis str. Ames] [NCBI NR]
  • gi|30260033|gb|AAP29218.1| transcription termination factor Rho [Bacillus anthracis str. Ames] [NCBI NR]
    • Organism: Bacillus anthracis str. Ames
    Length: 423 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transcription termination [ISSLink to PubMed article]
    Molecular Function: transcription termination factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLSIAALEN MKLKELYELA KEFKISYYSK LTKKELIFAI LKARAEKEGF FFMEGVLEII  60
   61 QSEGFGFLRP INYSPSSEDI YISASQIRRF DLRNGDKVSG KVRPPKENER YFGLLQVEAV 120
  121 NGDDPESAKE RVHFPALTPL YPDRQMKLET EPKKLPTRIM DLIAPVGFGQ RGLIVAPPKA 180
  181 GKTSLLKEIA HSVTTNHPEA ELIVLLIDER PEEVTDIERS VKGDFVSSTF DEVPENHIKV 240
  241 AELVLERAMR LVEHKKDVII LMDSITRLAR AYNLVIPPSG RTLSGGIDPA AFHRPKRFFG 300
  301 AARNIEEGGS LTILATALVD TGSRMDDVIY EEFKGTGNME LHLDRSLAER RIFPAIDIRR 360
  361 SGTRKEDLLI PKEHLDKLWG IRKTMRDTPD FVESFLRKLR QTKTNEEFLQ NIVADSKRYV 420
  421 TTK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..423] PSI-BLAST 139.0 Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; Transcription termination factor Rho, ATPase domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.77058770291147 bayes_pls_golite062009
  • binding
    		•  2.71792907654723 bayes_pls_golite062009
  • DNA binding
    		•  2.28186540915383 bayes_pls_golite062009
  • transcription termination factor activity
    		•  1.46620917553746 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.842524448456466 bayes_pls_golite062009
  • protein binding
    		•  0.360033745054291 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.231340006329088 bayes_pls_golite062009
  • structural molecule activity
    		•  0.102503787494587 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle