YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260033, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	423 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260033, gi|....

Description	E-value	Query Range	Subject Range
ATPA_CARHZ - ATP synthase subunit alpha OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-...	0.0	[1..423]	[1..433]
gi\|94495686, gi\|... - gi\|94495686\|ref\|ZP_01302266.1\| ATP synthase alpha subunit [Sphingomonas sp. SKA58], gi\|94425074\|gb\|E...	0.0	[1..417]	[1..432]
gi\|33329385, gi\|... - gi\|33329385\|gb\|AAQ10088.1\| ATP synthase subunit alpha [Bacillus sp. TA2.A1], gi\|158430152\|pdb\|2QE7\|C...	0.0	[1..423]	[1..433]
ATPA_ERYLH - ATP synthase subunit alpha OS=Erythrobacter litoralis (strain HTCC2594) GN=atpA PE=3 SV=1	0.0	[1..423]	[1..441]
ATPA_SYMTH - ATP synthase subunit alpha OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=atpA PE=3 SV=1 ATPA_SYMTH - ATP synthase subunit alpha OS=Symbiobacterium thermophilum GN=atpA PE=3 SV=1	0.0	[1..417]	[1..424]
gi\|37200117, gi\|... - gi\|37681365\|ref\|NP_935974.1\| transcription termination factor Rho [Vibrio vulnificus YJ016], gi\|3720...	0.0	[3..415]	[9..427]
ATPA_ALKMQ - ATP synthase subunit alpha OS=Alkaliphilus metalliredigens (strain QYMF) GN=atpA PE=3 SV=1	0.0	[1..423]	[1..433]
gi\|46915036, gi\|... - gi\|54310593\|ref\|YP_131613.1\| transcription termination factor Rho [Photobacterium profundum SS9], gi...	0.0	[3..416]	[36..455]
gi\|27364379, gi\|... - gi\|27364379\|ref\|NP_759907.1\| transcription termination factor Rho [Vibrio vulnificus CMCP6], gi\|2736...	0.0	[3..415]	[1..419]
ATPA_ALKOO - ATP synthase subunit alpha OS=Alkaliphilus oremlandii (strain OhILAs) GN=atpA PE=3 SV=1	0.0	[1..423]	[1..433]

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Predicted Domain #1

Region A:
Residues: [1-423]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLSIAALEN MKLKELYELA KEFKISYYSK LTKKELIFAI LKARAEKEGF FFMEGVLEII  60
   61 QSEGFGFLRP INYSPSSEDI YISASQIRRF DLRNGDKVSG KVRPPKENER YFGLLQVEAV 120
  121 NGDDPESAKE RVHFPALTPL YPDRQMKLET EPKKLPTRIM DLIAPVGFGQ RGLIVAPPKA 180
  181 GKTSLLKEIA HSVTTNHPEA ELIVLLIDER PEEVTDIERS VKGDFVSSTF DEVPENHIKV 240
  241 AELVLERAMR LVEHKKDVII LMDSITRLAR AYNLVIPPSG RTLSGGIDPA AFHRPKRFFG 300
  301 AARNIEEGGS LTILATALVD TGSRMDDVIY EEFKGTGNME LHLDRSLAER RIFPAIDIRR 360
  361 SGTRKEDLLI PKEHLDKLWG IRKTMRDTPD FVESFLRKLR QTKTNEEFLQ NIVADSKRYV 420
  421 TTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	139.0
Match:	1pv4A
Description:	Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; Transcription termination factor Rho, ATPase domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	2.77058770291147	bayes_pls_golite062009
binding	2.71792907654723	bayes_pls_golite062009
DNA binding	2.28186540915383	bayes_pls_golite062009
transcription termination factor activity	1.46620917553746	bayes_pls_golite062009
transcription regulator activity	0.842524448456466	bayes_pls_golite062009
protein binding	0.360033745054291	bayes_pls_golite062009
structure-specific DNA binding	0.231340006329088	bayes_pls_golite062009
structural molecule activity	0.102503787494587	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: