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Protein Overview: gi|30260244, gi|...

General Information:
Name(s) found: gi|30260244 [NCBI NR]
gi|30253565 [NCBI NR]
Description(s) found:
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  • gi|30260244|ref|NP_842621.1| transcription-repair coupling factor [Bacillus anthracis str. Ames] [NCBI NR]
  • gi|30253565|gb|AAP24107.1| transcription-repair coupling factor [Bacillus anthracis str. Ames] [NCBI NR]
  • transcription-repair coupling factor [Bacillus anthracis str. Sterne]gi|47525306|ref|YP_016655.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames Ancestor']gi|30260244|ref|NP_842621.1| transcription-repair coupling factor [Bacillus a [nrdb_11152004_Chlamydomonas]
  • transcription-repair coupling factor [Bacillus anthracis str. Ames] [nr-271106-contam.fasta]
    • Organism: Bacillus anthracis str. Ames
    Length: 1176 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [ISSLink to PubMed article]
    Molecular Function: ATPase activity [ISSLink to PubMed article]
    ATP binding [ISSLink to PubMed article]
    protein binding [ISSLink to PubMed article]
    double-stranded DNA binding [ISSLink to PubMed article]
    ATP-dependent DNA helicase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGLLEQFYK NEEIQSVING LEDGLKEQLV SGMATSSRSF LMAALYKKTK KSQLIVTHNL  60
   61 YQAQKVHEDL VALLGEKDVW LYPVNELIAS ELGVASPELK AQRIEVLNRL AAGEHGIIVA 120
  121 PVAGLRRFLP MKELWKQRQI EISLGQEIDL DTFLHTLHHI GYERKSMVEA PGEFSLRGGI 180
  181 LDIYPLTEEL PFRIEFFDTE VDSIRLFDVD EQRSQDKKES VRFGPATEFL FSQEELKSGI 240
  241 KHLEEGLTKT MQKLSDDKLK TTVLETVSHE IEMLKNGQSI EQMFKYLSIF YNEPASLIDY 300
  301 LPEDGVVILD EISRIQETAS HLESEEAEWY ISLLGEGTII QDLSFSHSFE EFLHHKKRSF 360
  361 VYLTLFLRHI AHTHPQNIVN VTCKTMQDFH GQMQLLKTEI DRWNEGHFTT VVLGTDDERV 420
  421 KKLQHILSDY DIDADIVEGT DILLPGRLQI AVGDLHAGFE MPMQKLVVIT EKELFHKKVK 480
  481 KSQRKQKLSN AERIKSYSEL KVGDYVVHVN HGIGKFLGIE TLEINGVHKD YLNIKYQGND 540
  541 KLYVPIEQID QVQKYVGSEG KDPKVYKLGG NDWKKVKTKV EKSVQDIADD LIKLYAEREA 600
  601 SKGYAYTPDT AEQQEFESSF PYQETEDQLR SIEEIKKDME RGRPMDRLLC GDVGYGKTEV 660
  661 AIRAAFKAIM DEKQVAILVP TTILAQQHYE TIRERFQDYP INIGLLSRFR TRKQQNETIK 720
  721 GLKDGTVDIV IGTHRILSKD VTYKDLGLLI IDEEQRFGVT HKEKIKQLKA NVDVLTLTAT 780
  781 PIPRTLHMSM LGVRDLSVIE TPPENRFPVQ TYVVEYNPAL MREAIERELA RGGQVYFLYN 840
  841 RVEDIERKAD EISMLVPDAR VTYAHGKMNE SELESVMLSF LEGQHDVLVS TTIIETGVDI 900
  901 PNVNTLIVFD ADRMGLSQLY QLRGRVGRSN RVAYAYFAYK RDKVLSEVAE KRLQAIKEFT 960
  961 ELGSGFKIAM RDLSIRGAGN LLGAEQHGFI DSVGFDLYSQ MLKDAIEQRR GTDGVENTVN1020
 1021 VEIDLEVDAY LPDAYISDSK QKIMMYKQFR GVSAIEDIEE LQEEMIDRFG DYPQEVGYLL1080
 1081 QIANIKVLAM KEQIELIKQN KFEVTILFSE QASQNIDGGK LFMLGNSFGR MIGLGMEGSQ1140
 1141 LKIVMKTNGL ETSKWLTIAE NLLKGLPDVK KEVINA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1176] PSI-BLAST 1000.0 Crystal structure of Escherichia coli transcription-repair coupling factor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.37148167194523 bayes_pls_golite062009
  • hydrolase activity
    		•  1.18412998130788 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.16998111465319 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  1.16375481834344 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.15942143195918 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.15882580213621 bayes_pls_golite062009
  • binding
    		•  0.712909626033412 bayes_pls_golite062009
  • ATPase activity
    		•  0.62253664120117 bayes_pls_golite062009
  • helicase activity
    		•  0.00674361801283974 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle