YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260244, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	1176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260244, gi|....

Description	E-value	Query Range	Subject Range
gi\|49479988, gi\|... - gi\|49479988\|ref\|YP_034406.1\| transcription-repair coupling factor [Bacillus thuringiensis serovar ko...	0.0	[1..1176]	[3..1178]
gi\|52145163, gi\|... - gi\|52145163\|ref\|YP_081665.1\| transcription-repair coupling factor [Bacillus cereus E33L], gi\|5197863...	0.0	[1..1176]	[1..1176]
gi\|222093823, gi... - gi\|222093823\|ref\|YP_002527872.1\| transcription-repair coupling factor [Bacillus cereus Q1], gi\|22123... gi\|217957629, gi... - gi\|217957629\|ref\|YP_002336171.1\| transcription-repair coupling factor [Bacillus cereus AH187], gi\|21... gi\|42779132, gi\|... - gi\|42779132\|ref\|NP_976379.1\| transcription-repair coupling factor [Bacillus cereus ATCC 10987], gi\|4... gi\|206743830, gi... - gi\|206977924\|ref\|ZP_03238811.1\| transcription-repair coupling factor [Bacillus cereus H3081.97], gi\|... gi\|228646565, gi... - gi\|229136900\|ref\|ZP_04265528.1\| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26], gi...	0.0	[1..1176]	[1..1176]
gi\|228589034, gi... - gi\|229194444\|ref\|ZP_04321248.1\| Transcription-repair-coupling factor [Bacillus cereus m1293], gi\|228... gi\|47569902, gi\|... - gi\|47569902\|ref\|ZP_00240569.1\| transcription-repair coupling factor [Bacillus cereus G9241], gi\|4755... gi\|228776423, gi... - gi\|228983309\|ref\|ZP_04143523.1\| Transcription-repair-coupling factor [Bacillus thuringiensis serovar...	0.0	[1..1176]	[1..1176]
gi\|30018324, gi\|... - gi\|30018324\|ref\|NP_829955.1\| transcription-repair coupling factor [Bacillus cereus ATCC 14579], gi\|2... gi\|229125571, gi... - gi\|229125571\|ref\|ZP_04254604.1\| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4], gi...	0.0	[1..1176]	[1..1176]
gi\|75759615, gi\|... - gi\|75759615\|ref\|ZP_00739701.1\| Transcription-repair coupling factor [Bacillus thuringiensis serovar ...	0.0	[1..1176]	[11..1186]
gi\|221317120 - gi\|221317120\|ref\|ZP_03598414.1\| transcription-repair coupling factor [Bacillus subtilis subsp. subti... gi\|221321383 - gi\|221321383\|ref\|ZP_03602677.1\| transcription-repair coupling factor [Bacillus subtilis subsp. subti... MFD_BACSU - Transcription-repair-coupling factor OS=Bacillus subtilis (strain 168) GN=mfd PE=3 SV=1 MFD_BACSU - Transcription-repair-coupling factor OS=Bacillus subtilis GN=mfd PE=3 SV=1 gi\|221312187 - gi\|221312187\|ref\|ZP_03593992.1\| transcription-repair coupling factor [Bacillus subtilis subsp. subti...	0.0	[1..1176]	[1..1176]
gi\|152022653, gi... - gi\|89202227\|ref\|ZP_01180955.1\| Transcription-repair coupling factor [Bacillus cereus subsp. cytotoxi...	0.0	[1..1176]	[1..1176]
gi\|89207194, gi\|... - gi\|89207194\|ref\|ZP_01185740.1\| Transcription-repair coupling factor [Bacillus weihenstephanensis KBA...	0.0	[1..1176]	[1..1176]
gi\|52346414, gi\|... - gi\|52783912\|ref\|YP_089741.1\| hypothetical protein BLi00068 [Bacillus licheniformis ATCC 14580], gi\|5...	0.0	[1..1176]	[1..1176]

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Predicted Domain #1

Region A:
Residues: [1-1176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGLLEQFYK NEEIQSVING LEDGLKEQLV SGMATSSRSF LMAALYKKTK KSQLIVTHNL  60
   61 YQAQKVHEDL VALLGEKDVW LYPVNELIAS ELGVASPELK AQRIEVLNRL AAGEHGIIVA 120
  121 PVAGLRRFLP MKELWKQRQI EISLGQEIDL DTFLHTLHHI GYERKSMVEA PGEFSLRGGI 180
  181 LDIYPLTEEL PFRIEFFDTE VDSIRLFDVD EQRSQDKKES VRFGPATEFL FSQEELKSGI 240
  241 KHLEEGLTKT MQKLSDDKLK TTVLETVSHE IEMLKNGQSI EQMFKYLSIF YNEPASLIDY 300
  301 LPEDGVVILD EISRIQETAS HLESEEAEWY ISLLGEGTII QDLSFSHSFE EFLHHKKRSF 360
  361 VYLTLFLRHI AHTHPQNIVN VTCKTMQDFH GQMQLLKTEI DRWNEGHFTT VVLGTDDERV 420
  421 KKLQHILSDY DIDADIVEGT DILLPGRLQI AVGDLHAGFE MPMQKLVVIT EKELFHKKVK 480
  481 KSQRKQKLSN AERIKSYSEL KVGDYVVHVN HGIGKFLGIE TLEINGVHKD YLNIKYQGND 540
  541 KLYVPIEQID QVQKYVGSEG KDPKVYKLGG NDWKKVKTKV EKSVQDIADD LIKLYAEREA 600
  601 SKGYAYTPDT AEQQEFESSF PYQETEDQLR SIEEIKKDME RGRPMDRLLC GDVGYGKTEV 660
  661 AIRAAFKAIM DEKQVAILVP TTILAQQHYE TIRERFQDYP INIGLLSRFR TRKQQNETIK 720
  721 GLKDGTVDIV IGTHRILSKD VTYKDLGLLI IDEEQRFGVT HKEKIKQLKA NVDVLTLTAT 780
  781 PIPRTLHMSM LGVRDLSVIE TPPENRFPVQ TYVVEYNPAL MREAIERELA RGGQVYFLYN 840
  841 RVEDIERKAD EISMLVPDAR VTYAHGKMNE SELESVMLSF LEGQHDVLVS TTIIETGVDI 900
  901 PNVNTLIVFD ADRMGLSQLY QLRGRVGRSN RVAYAYFAYK RDKVLSEVAE KRLQAIKEFT 960
  961 ELGSGFKIAM RDLSIRGAGN LLGAEQHGFI DSVGFDLYSQ MLKDAIEQRR GTDGVENTVN1020
 1021 VEIDLEVDAY LPDAYISDSK QKIMMYKQFR GVSAIEDIEE LQEEMIDRFG DYPQEVGYLL1080
 1081 QIANIKVLAM KEQIELIKQN KFEVTILFSE QASQNIDGGK LFMLGNSFGR MIGLGMEGSQ1140
 1141 LKIVMKTNGL ETSKWLTIAE NLLKGLPDVK KEVINA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2eyqA
Description:	Crystal structure of Escherichia coli transcription-repair coupling factor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
hydrolase activity	1.18412998130788	bayes_pls_golite062009
pyrophosphatase activity	1.16998111465319	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.16375481834344	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.15942143195918	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.15882580213621	bayes_pls_golite062009
binding	0.712909626033412	bayes_pls_golite062009
ATPase activity	0.62253664120117	bayes_pls_golite062009
helicase activity	0.00674361801283974	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: