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Protein Overview: gi|221317120

General Information:
Name(s) found: gi|221317120 [NCBI NR]
Description(s) found:
  • gi|221317120|ref|ZP_03598414.1| transcription-repair coupling factor [Bacillus subtilis subsp. subtilis str. JH642] [NCBI NR]
    • Organism: Bacillus subtilis subsp. subtilis str. JH642
    Length: 1177 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNIQTFIKE SDDFKSIING LHEGLKEQLL AGLSGSARSV FTSALANETN KPIFLITHNL  60
   61 YQAQKVTDDL TSLLEDRSVL LYPVNELISS EIAVASPELR AQRLDVINRL TNGEAPIVVA 120
  121 PVAAIRRMLP PVEVWKSSQM LIQVGHDIEP DQLASRLVEV GYERSDMVSA PGEFSIRGGI 180
  181 IDIYPLTSEN PVRIELFDTE VDSIRSFNSD DQRSIETLTS INIGPAKELI IRPEEKARAM 240
  241 EKIDSGLAAS LKKLKADKQK EILHANISHD KERLSEGQTD QELVKYLSYF YEKPASLLDY 300
  301 TPDNTLLILD EVSRIHEMEE QLQKEEAEFI TNLLEEGKIL HDIRLSFSFQ KIVAEQKRPL 360
  361 LYYSLFLRHV HHTSPQNIVN VSGRQMQSFH GQMNVLAGEM ERFKKSNFTV VFLGANKERT 420
  421 QKLSSVLADY DIEAAMTDSK KALVQGQVYI MEGELQSGFE LPLMKLAVIT EEELFKNRVK 480
  481 KKPRKQKLTN AERIKSYSEL QIGDYVVHIN HGIGKYLGIE TLEINGIHKD YLNIHYQGSD 540
  541 KLYVPVEQID QVQKYVGSEG KEPKLYKLGG SEWKRVKKKV ETSVQDIADD LIKLYAEREA 600
  601 SKGYAFSPDH EMQREFESAF PYQETEDQLR SIHEIKKDME RERPMDRLLC GDVGYGKTEV 660
  661 AIRAAFKAIG DGKQVALLVP TTILAQQHYE TIKERFQDYP INIGLLSRFR TRKEANETIK 720
  721 GLKNGTVDIV IGTHRLLSKD VVYKDLGLLI IDEEQRFGVT HKEKIKQIKA NVDVLTLTAT 780
  781 PIPRTLHMSM LGVRDLSVIE TPPENRFPVQ TYVVEYNGAL VREAIERELA RGGQVYFLYN 840
  841 RVEDIERKAD EISMLVPDAK VAYAHGKMTE NELETVMLSF LEGESDVLVS TTIIETGVDI 900
  901 PNVNTLIVFD ADKMGLSQLY QLRGRVGRSN RVAYAYFTYR RDKVLTEVAE KRLQAIKEFT 960
  961 ELGSGFKIAM RDLTIRGAGN LLGAQQHGFI DSVGFDLYSQ MLKEAIEERK GDTAKTEQFE1020
 1021 TEIDVELDAY IPETYIQDGK QKIDMYKRFR SVATIEEKNE LQDEMIDRFG NYPKEVEYLF1080
 1081 TVAEMKVYAR QERVELIKQD KDAVRLTISE EASAEIDGQK LFELGNQYGR QIGLGMEGKK1140
 1141 LKISIQTKGR SADEWLDTVL GMLKGLKDVK KQTISST

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1177] PSI-BLAST 1000.0 Crystal structure of Escherichia coli transcription-repair coupling factor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.37148167194523 bayes_pls_golite062009
  • hydrolase activity
    		•  1.18412998130788 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.16998111465319 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  1.16375481834344 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.15942143195918 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.15882580213621 bayes_pls_golite062009
  • binding
    		•  0.712909626033412 bayes_pls_golite062009
  • ATPase activity
    		•  0.62253664120117 bayes_pls_golite062009
  • helicase activity
    		•  0.00674361801283974 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle