YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|39998010, gi|...

General Information:
Name(s) found: gi|39998010 [NCBI NR]
gi|39984955 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|39998010|ref|NP_953961.1| transketolase, N-terminal subunit [Geobacter sulfurreducens PCA] [NCBI NR]
  • gi|39984955|gb|AAR36311.1| transketolase, N-terminal subunit [Geobacter sulfurreducens PCA] [NCBI NR]
    • Organism: Geobacter sulfurreducens PCA
    Length: 277 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pentose-phosphate shunt [ISSLink to PubMed article]
    Molecular Function: transketolase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSEKIKQLE ETARRLRVDI VKTLHSSQSG HTGGSLSAID MVTALYFHEM KHDPTNPAWS  60
   61 ERDRFVLCKG HAAPALYVAL AATGYFPKED LMMLRRLGSH LQGHPDSKQT PGVEVCTGSL 120
  121 GQGLSMANGM ALGLRLDGSA SRVYALLGDG ELQEGQVWEA AMAAGHFKLD NLCALIDVNR 180
  181 LQIDGEVEKV MNVEPVTDKF RAFGWNVIDI DGHDMAAIVG ALAQAAEVNG RPTAIVARTV 240
  241 KGKGVSFFEN KASYHGVAPS DEELPKALEC LGEQCYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..277] PSI-BLAST 68.0 Transketolase (TK), Pyr module; Transketolase (TK), PP module; Transketolase (TK), C-domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transferase activity, transferring aldehyde or ketonic groups
    		•  4.74831149446647 bayes_pls_golite062009
  • transketolase activity
    		•  3.87771355567813 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
    		•  2.65646188468146 bayes_pls_golite062009
  • pyruvate dehydrogenase activity
    		•  2.54266889511892 bayes_pls_golite062009
  • pyruvate dehydrogenase (acetyl-transferring) activity
    		•  2.42595853232751 bayes_pls_golite062009
  • catalytic activity
    		•  2.25537597692103 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle