YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39998010, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39998010, gi|....

Description	E-value	Query Range	Subject Range
gi\|168826063, gi... - gi\|32029978\|ref\|ZP_00132914.1\| COG0021: Transketolase [Haemophilus somnus 2336], gi\|170717934\|ref\|YP...	259.0	[0..10]	[273..5]
gi\|78362023, gi\|... - gi\|78365800\|ref\|ZP_00836084.1\| transketolase [Shewanella sp. PV-4], gi\|78362023\|gb\|EAP03843.1\| trans...	259.0	[0..10]	[274..5]
gi\|56461314, gi\|... - gi\|56461314\|ref\|YP_156595.1\| transketolase [Idiomarina loihiensis L2TR], gi\|56180324\|gb\|AAV83046.1\| ...	257.0	[0..12]	[274..7]
gi\|112822739, gi... - gi\|113460696\|ref\|YP_718762.1\| transketolase [Haemophilus somnus 129PT], gi\|112822739\|gb\|ABI24828.1\| ...	257.0	[0..12]	[273..1]
TKT_BUCBP - Transketolase OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=tkt PE=3 SV=1 TKT_BUCBP - Transketolase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=tkt PE=3 SV=1 gi\|227468456\|emb... - unnamed protein product [Buchnera aphidicola]	256.0	[0..10]	[276..5]
gi\|71282581, gi\|... - gi\|71282581\|ref\|YP_270534.1\| transketolase [Colwellia psychrerythraea 34H], gi\|71148321\|gb\|AAZ28794....	256.0	[0..11]	[273..6]
gi\|120600095, gi... - gi\|82740542\|ref\|ZP_00903281.1\| transketolase [Shewanella sp. W3-18-1], gi\|82722146\|gb\|EAP56973.1\| tr...	256.0	[0..12]	[274..7]
gi\|145563666, gi... - gi\|77813074\|ref\|ZP_00812355.1\| transketolase [Shewanella putrefaciens CN-32], gi\|77811909\|gb\|EAO9627... gi\|124545702, gi... - gi\|124545702\|ref\|ZP_01704877.1\| transketolase [Shewanella putrefaciens 200], gi\|124510678\|gb\|EAY5474...	256.0	[0..12]	[274..7]
gi\|16766377, gi\|... - gi\|16766377\|ref\|NP_461992.1\| transketolase [Salmonella typhimurium LT2], gi\|16421628\|gb\|AAL21951.1\| ... gi\|167990403, gi... - gi\|205331175\|gb\|EDZ17939.1\| transketolase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- ... lcl\|NC_016856.1_... - [gene=tktA] [protein=transketolase] [protein_id=YP_005239220.1] [location=complement(3255532..325752... gi\|197262122, gi... - gi\|197262122\|ref\|ZP_03162196.1\| transketolase [Salmonella enterica subsp. enterica serovar Saintpaul...	256.0	[0..10]	[273..5]
gi\|46133244 - gi\|46133244\|ref\|ZP_00156879.2\| COG0021: Transketolase [Haemophilus influenzae R2866]	256.0	[0..10]	[274..20]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSEKIKQLE ETARRLRVDI VKTLHSSQSG HTGGSLSAID MVTALYFHEM KHDPTNPAWS  60
   61 ERDRFVLCKG HAAPALYVAL AATGYFPKED LMMLRRLGSH LQGHPDSKQT PGVEVCTGSL 120
  121 GQGLSMANGM ALGLRLDGSA SRVYALLGDG ELQEGQVWEA AMAAGHFKLD NLCALIDVNR 180
  181 LQIDGEVEKV MNVEPVTDKF RAFGWNVIDI DGHDMAAIVG ALAQAAEVNG RPTAIVARTV 240
  241 KGKGVSFFEN KASYHGVAPS DEELPKALEC LGEQCYL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.0
Match:	1qgdA
Description:	Transketolase (TK), Pyr module; Transketolase (TK), PP module; Transketolase (TK), C-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	4.74831149446647	bayes_pls_golite062009
transketolase activity	3.87771355567813	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	2.65646188468146	bayes_pls_golite062009
pyruvate dehydrogenase activity	2.54266889511892	bayes_pls_golite062009
pyruvate dehydrogenase (acetyl-transferring) activity	2.42595853232751	bayes_pls_golite062009
catalytic activity	2.25537597692103	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: