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Protein Overview: gi|39982202, gi|...

General Information:
Name(s) found: gi|39995439 [NCBI NR]
gi|39982202 [NCBI NR]
Description(s) found:
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  • gi|39995439|ref|NP_951390.1| general secretion pathway protein C, putative [Geobacter sulfurreducens PCA] [NCBI NR]
  • gi|39982202|gb|AAR33663.1| general secretion pathway protein C, putative [Geobacter sulfurreducens PCA] [NCBI NR]
  • general secretion pathway protein C, putative [Geobacter sulfurreducens PCA]gi|39982202|gb|AAR33663.1| general secretion pathway protein C, putative [Geobacter sulfurreducens PCA] [nrdb_11152004_Chlamydomonas]
  • general secretion pathway protein C, putative [Geobacter sulfurreducens PCA] [nr-271106-contam.fasta]
    • Organism: Geobacter sulfurreducens PCA
    Length: 291 amino acids

    Gene Ontology:
    Cellular Component: type II protein secretion system complex [ISSLink to PubMed article]
    Biological Process: protein secretion by the type II secretion system [ISSLink to PubMed article]
    Molecular Function: protein transporter activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVYLLTAL LIALNSLAAA RIAAGLISYR LARTAPHTAM GATGAPAAAV SDDILSFASI  60
   61 LDQGLFGRAT QGKLTPLSAP VQGAAGAQQP APTHGDLTLL GTARGSFRET FALIRRATPP 120
  121 EERVFRLGDT VFGIGPLVGV QKESVEILAN GRKIRLTTPL AMGIEPTSAP PPPAVAPQTG 180
  181 AVQVGAGSYV IDQRALNAAL ENLGQVMTDA RLLPSVKEGK VEGFRISEVK PAGVFSMIGM 240
  241 RNGDILLRIN DLPVDSPERA IQSLASLKGQ NRIKLDLVRD GQPTTFSYDI R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..291] PSI-BLAST 35.0 Crystal Structure of DegS protease in complex with an activating peptide

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein transporter activity
    		•  4.09893197720214 bayes_pls_golite062009
  • hydrolase activity
    		•  2.34826707443224 bayes_pls_golite062009
  • catalytic activity
    		•  0.866675099356829 bayes_pls_golite062009
  • transporter activity
    		•  0.666562078558936 bayes_pls_golite062009
  • protein binding
    		•  0.652103952266057 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.510205657363692 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.223767606620463 bayes_pls_golite062009
  • binding
    		•  0.217276172272609 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.190072080695712 bayes_pls_golite062009
  • peptidase activity
    		•  0.172224584196316 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.141613198202921 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle