YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982202, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982202, gi|....

Description	E-value	Query Range	Subject Range
gi\|32029688 - gi\|32029688\|ref\|ZP_00132671.1\| COG0265: Trypsin-like serine proteases, typically periplasmic, contai...	168.0	[0..46]	[291..125]
gi\|78224552, gi\|... - gi\|78224552\|ref\|YP_386299.1\| peptidase S1C, Do [Geobacter metallireducens GS-15], gi\|78195807\|gb\|ABB...	166.0	[0..52]	[290..155]
gi\|59712832, gi\|... - gi\|59712832\|ref\|YP_205608.1\| serine endoprotease DegP (protease Do), periplasmic [Vibrio fischeri ES...	166.0	[0..47]	[291..148]
gi\|112823002, gi... - gi\|113460959\|ref\|YP_719026.1\| periplasmic serine protease [Haemophilus somnus 129PT], gi\|112823002\|g...	165.0	[0..46]	[291..154]
gi\|7429912 - pir\|\|B70426 periplasmic serine proteinase (EC 3.4.21.-) - Aquifex aeolicus gi\|2983845, gi\|1... - gi\|2983845\|gb\|AAC07399.1\| periplasmic serine protease [Aquifex aeolicus VF5], gi\|15606621\|ref\|NP_214...	164.0	[0..26]	[290..119]
gi\|89075252, gi\|... - gi\|89075252\|ref\|ZP_01161679.1\| putative DegQ serine protease [Photobacterium sp. SKA34], gi\|89048933...	163.0	[0..47]	[291..149]
gi\|75825935 - gi\|75825935\|ref\|ZP_00755370.1\| COG0265: Trypsin-like serine proteases, typically periplasmic, contai... gi\|75828604, gi\|... - gi\|75828604\|ref\|ZP_00757976.1\| COG0265: Trypsin-like serine proteases, typically periplasmic, contai...	163.0	[0..23]	[290..87]
gi\|95112253, gi\|... - gi\|95112253\|emb\|CAK16980.1\| serine protease MucD [Pseudomonas entomophila L48], gi\|104783266\|ref\|YP_... gi\|95112253 - gi\|95112253\|emb\|CAK16980.1\| serine protease MucD [Pseudomonas entomophila L48]	162.0	[0..22]	[290..136]
gi\|229344317, gi... - gi\|229519628\|ref\|ZP_04409071.1\| outer membrane stress sensor protease DegQ [Vibrio cholerae RC9], gi... gi\|229342095, gi... - gi\|229520862\|ref\|ZP_04410284.1\| outer membrane stress sensor protease DegQ [Vibrio cholerae TM 11079... gi\|227080749, gi... - gi\|227080749\|ref\|YP_002809300.1\| protease DO [Vibrio cholerae M66-2], gi\|227008637\|gb\|ACP04849.1\| pr... gi\|229507177, gi... - gi\|229507177\|ref\|ZP_04396683.1\| outer membrane stress sensor protease DegQ [Vibrio cholerae BX 33028... gi\|15640588, gi\|... - gi\|9654996\|gb\|AAF93734.1\| protease DO [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|15640588\|re... gi\|11278798 - pir\|\|F82307 proteinase DO VC0566 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|229606145, gi... - gi\|229606145\|ref\|YP_002876793.1\| outer membrane stress sensor protease DegQ [Vibrio cholerae MJ-1236... gi\|121591583, gi... - gi\|121591583\|ref\|ZP_01678838.1\| protease DO [Vibrio cholerae 2740-80], gi\|121546565\|gb\|EAX56765.1\| p... gi\|124120842, gi... - gi\|153803624\|ref\|ZP_01958210.1\| protease DO [Vibrio cholerae MZO-3], gi\|124120842\|gb\|EAY39585.1\| pro... gi\|153224050, gi... - gi\|153224050\|ref\|ZP_01954195.1\| protease DO [Vibrio cholerae MAK 757], gi\|124117870\|gb\|EAY36613.1\| p... gi\|126518367, gi... - gi\|229509162\|ref\|ZP_04398647.1\| outer membrane stress sensor protease DegQ [Vibrio cholerae B33], gi... gi\|125617304 - gi\|125617304\|gb\|EAZ45876.1\| protease DO [Vibrio cholerae MO10] gi\|153830227, gi... - gi\|153830227\|ref\|ZP_01982894.1\| protease DO [Vibrio cholerae 623-39], gi\|148874287\|gb\|EDL72422.1\| pr... gi\|147673156, gi... - gi\|227116942\|ref\|YP_002818838.1\| protease DO [Vibrio cholerae O395], gi\|227012392\|gb\|ACP08602.1\| pro...	162.0	[0..23]	[290..130]
gi\|52425048, gi\|... - gi\|52425048\|ref\|YP_088185.1\| DegQ protein [Mannheimia succiniciproducens MBEL55E], gi\|52307100\|gb\|AA...	162.0	[0..46]	[291..179]

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Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVYLLTAL LIALNSLAAA RIAAGLISYR LARTAPHTAM GATGAPAAAV SDDILSFASI  60
   61 LDQGLFGRAT QGKLTPLSAP VQGAAGAQQP APTHGDLTLL GTARGSFRET FALIRRATPP 120
  121 EERVFRLGDT VFGIGPLVGV QKESVEILAN GRKIRLTTPL AMGIEPTSAP PPPAVAPQTG 180
  181 AVQVGAGSYV IDQRALNAAL ENLGQVMTDA RLLPSVKEGK VEGFRISEVK PAGVFSMIGM 240
  241 RNGDILLRIN DLPVDSPERA IQSLASLKGQ NRIKLDLVRD GQPTTFSYDI R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1sozA
Description:	Crystal Structure of DegS protease in complex with an activating peptide
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein transporter activity	4.09893197720214	bayes_pls_golite062009
hydrolase activity	2.34826707443224	bayes_pls_golite062009
catalytic activity	0.866675099356829	bayes_pls_golite062009
transporter activity	0.666562078558936	bayes_pls_golite062009
protein binding	0.652103952266057	bayes_pls_golite062009
transmembrane transporter activity	0.510205657363692	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.223767606620463	bayes_pls_golite062009
binding	0.217276172272609	bayes_pls_golite062009
endopeptidase activity	0.190072080695712	bayes_pls_golite062009
peptidase activity	0.172224584196316	bayes_pls_golite062009
substrate-specific transporter activity	0.141613198202921	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: