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Protein Overview: gi|24351268, gi|...

General Information:
Name(s) found: gi|24376211 [NCBI NR]
gi|24351268 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24376211|ref|NP_720255.1| naphthoate synthase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24351268|gb|AAN57698.1|AE015906_5 naphthoate synthase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 300 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: menaquinone biosynthetic process [ISSLink to PubMed article]
    Molecular Function: naphthoate synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKPVSDTFD PTLWDQVNGF NFTDITYHRA KAHGTVRIAI NRPDCLNAFR PKTVDELYIA  60
   61 LDHARQWSDV GCALLTGNGP SAKGQYSFSS GGDQRIRGKD GYKYEGAEEG KADLARMGRL 120
  121 HILEVQRLIR FMPKVVIAVV PGWAVGGGHS LHVVCDLTLA SKEHAIFKQT DPDVASFDSG 180
  181 YGSAYLAKMI GQKRAREIFF CGFNYSADEA FAMGMVNKSV PHAELEVEAL RWAKEINSKS 240
  241 PTAMRMLKYG FNMTDDGMVG QQLFAGEATR LAYASAEAQE GRDAFLEKRD QDFSAFPWHY 300
  301

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..300] PSI-BLAST 63.69897 Crystal Structure of MenB (Rv0548c) from Mycobacterium tuberculosis

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • enoyl-CoA hydratase activity
    		•  3.92947460544831 bayes_pls_golite062009
  • CoA carboxylase activity
    		•  3.59076614105466 bayes_pls_golite062009
  • ligase activity, forming carbon-carbon bonds
    		•  3.4980371783229 bayes_pls_golite062009
  • acetyl-CoA carboxylase activity
    		•  3.34692152434862 bayes_pls_golite062009
  • 3-hydroxyacyl-CoA dehydrogenase activity
    		•  2.44182589784656 bayes_pls_golite062009
  • dodecenoyl-CoA delta-isomerase activity
    		•  1.80820904754223 bayes_pls_golite062009
  • catalytic activity
    		•  1.46154163027498 bayes_pls_golite062009
  • propionyl-CoA carboxylase activity
    		•  1.20853698666984 bayes_pls_golite062009
  • long-chain-3-hydroxyacyl-CoA dehydrogenase activity
    		•  1.03484393216342 bayes_pls_golite062009
  • ligase activity
    		•  0.98581896521131 bayes_pls_golite062009
  • binding
    		•  0.578223105269736 bayes_pls_golite062009
  • long-chain-enoyl-CoA hydratase activity
    		•  0.571617594666499 bayes_pls_golite062009
  • 3-hydroxybutyryl-CoA epimerase activity
    		•  0.241955774397835 bayes_pls_golite062009
  • racemase and epimerase activity, acting on hydroxy acids and derivatives
    		•  0.099208209617217 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, transposing C=C bonds
    		•  0.0918189681606029 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle