YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351268, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351268, gi|....

Description	E-value	Query Range	Subject Range
gi\|20807045, gi\|... - gi\|20807045\|ref\|NP_622216.1\| 3-hydroxybutyryl-CoA dehydratase [Thermoanaerobacter tengcongensis MB4]... gi\|20807045 - gi\|20807045\|ref\|NP_622216.1\| enoyl-CoA hydratase [Thermoanaerobacter tengcongensis MB4]	284.0	[0..20]	[293..1]
gi\|18145966, gi\|... - gi\|18311283\|ref\|NP_563217.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens str. 13], gi\|... gi\|110673862, gi... - gi\|110799215\|ref\|YP_696975.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens ATCC 13124],... gi\|182625533, gi... - gi\|182625533\|ref\|ZP_02953304.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens D str. JGS... gi\|170715197, gi... - gi\|170715197\|gb\|EDT27379.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens CPE str. F4969...	274.0	[0..27]	[294..6]
gi\|28204455, gi\|... - gi\|28212012\|ref\|NP_782956.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium tetani E88], gi\|28204455\|...	272.0	[0..20]	[290..1]
gi\|120600828, gi... - gi\|82742522\|ref\|ZP_00905212.1\| Naphthoate synthase [Shewanella sp. W3-18-1], gi\|82720140\|gb\|EAP55016... gi\|77813712, gi\|... - gi\|77813712\|ref\|ZP_00812985.1\| Naphthoate synthase [Shewanella putrefaciens CN-32], gi\|77811218\|gb\|E...	272.0	[0..1]	[300..1]
gi\|127514742, gi... - gi\|78367711\|ref\|ZP_00837975.1\| Naphthoate synthase [Shewanella sp. PV-4], gi\|78360257\|gb\|EAP02097.1\|...	272.0	[0..1]	[300..1]
gi\|110683900, gi... - gi\|110803399\|ref\|YP_699562.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens SM101], gi\|1...	271.0	[0..27]	[294..6]
gi\|88926146, gi\|... - gi\|88944140\|ref\|ZP_01147473.1\| putative crotonase [Desulfotomaculum reducens MI-1], gi\|88926146\|gb\|E...	270.0	[0..22]	[294..1]
gi\|78509337, gi\|... - gi\|78691283\|ref\|ZP_00855907.1\| Naphthoate synthase [Shewanella sp. MR-7], gi\|78509337\|gb\|EAP22735.1\|... gi\|117922554, gi... - gi\|78687815\|ref\|ZP_00852551.1\| Naphthoate synthase [Shewanella sp. ANA-3], gi\|78504426\|gb\|EAP17983.1...	268.0	[0..1]	[300..1]
gi\|126176521, gi... - gi\|68544606\|ref\|ZP_00584236.1\| Naphthoate synthase [Shewanella baltica OS155], gi\|68517691\|gb\|EAN413... gi\|151367472, gi... - gi\|153002854\|ref\|YP_001368535.1\| naphthoate synthase [Shewanella baltica OS185], gi\|151367472\|gb\|ABS... gi\|217975441, gi... - gi\|217975441\|ref\|YP_002360192.1\| naphthoate synthase [Shewanella baltica OS223], gi\|217500576\|gb\|ACK... gi\|113950738, gi... - gi\|160877601\|ref\|YP_001556917.1\| naphthoate synthase [Shewanella baltica OS195], gi\|160863123\|gb\|ABX...	268.0	[0..1]	[300..1]
gi\|68513759, gi\|... - gi\|68548540\|ref\|ZP_00588034.1\| Naphthoate synthase [Shewanella amazonensis SB2B], gi\|68513759\|gb\|EAN...	268.0	[0..1]	[300..1]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKPVSDTFD PTLWDQVNGF NFTDITYHRA KAHGTVRIAI NRPDCLNAFR PKTVDELYIA  60
   61 LDHARQWSDV GCALLTGNGP SAKGQYSFSS GGDQRIRGKD GYKYEGAEEG KADLARMGRL 120
  121 HILEVQRLIR FMPKVVIAVV PGWAVGGGHS LHVVCDLTLA SKEHAIFKQT DPDVASFDSG 180
  181 YGSAYLAKMI GQKRAREIFF CGFNYSADEA FAMGMVNKSV PHAELEVEAL RWAKEINSKS 240
  241 PTAMRMLKYG FNMTDDGMVG QQLFAGEATR LAYASAEAQE GRDAFLEKRD QDFSAFPWHY 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	1rjmA
Description:	Crystal Structure of MenB (Rv0548c) from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
enoyl-CoA hydratase activity	3.92947460544831	bayes_pls_golite062009
CoA carboxylase activity	3.59076614105466	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	3.4980371783229	bayes_pls_golite062009
acetyl-CoA carboxylase activity	3.34692152434862	bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity	2.44182589784656	bayes_pls_golite062009
dodecenoyl-CoA delta-isomerase activity	1.80820904754223	bayes_pls_golite062009
catalytic activity	1.46154163027498	bayes_pls_golite062009
propionyl-CoA carboxylase activity	1.20853698666984	bayes_pls_golite062009
long-chain-3-hydroxyacyl-CoA dehydrogenase activity	1.03484393216342	bayes_pls_golite062009
ligase activity	0.98581896521131	bayes_pls_golite062009
binding	0.578223105269736	bayes_pls_golite062009
long-chain-enoyl-CoA hydratase activity	0.571617594666499	bayes_pls_golite062009
3-hydroxybutyryl-CoA epimerase activity	0.241955774397835	bayes_pls_golite062009
racemase and epimerase activity, acting on hydroxy acids and derivatives	0.099208209617217	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing C=C bonds	0.0918189681606029	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: