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Protein Overview: SYV_SHEON

General Information:
Name(s) found: SYV_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • Valine--tRNA ligase OS=Shewanella oneidensis (strain MR-1) GN=valS PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 958 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: valyl-tRNA aminoacylation [ISSLink to PubMed article]
    Molecular Function: valine-tRNA ligase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKTYDPQSI EQTLYQNWEE KGYFKPHGDA SQGNYCIMIP PPNVTGSLHM GHAFQDTIMD  60
   61 TLIRYQRMKG KNTLWQVGTD HAGIATQMLV ERKLEAEEGK SRHDLGRDVF MEKVWEWKAQ 120
  121 SGGTITKQLR RMGASVDWDR ERFTMDEGLS KAVQEVFVRL YEDDLIYRGK RLVNWDPKLH 180
  181 TAISDLEVEN KEKQGHMWHL RYPLADGELT ADGKDYLEVA TTRPETMLGD SAVAVHPDDE 240
  241 RYQALIGKYI LLPIVNRRIP IVADDYVDMA FGTGCVKITP AHDFNDYEVG KRHKLPMFNV 300
  301 LTLDAAIRSS AEVVNTDGTI NTSLDGSLPE RYAGLDRFKA RDAIVAEFET LGLLEKIAPH 360
  361 GLKVPYGDRS GVVIEPMLTD QWYVAVAPMA KTAIEAVENG DIKFVPQQYE NMYFSWMRDI 420
  421 QDWCISRQLW WGHRIPAWYD TNGKVYVGRT EAEVRAKHDI DDAIALRQDE DVLDTWFSSA 480
  481 LWTFSTLGWP DNVEDLKTFH PTDVLVTGFD IIFFWVARMI MMTMHFIKDE DGKPQVPFKT 540
  541 VYVTGLIRDE AGNKMSKSKG NVLDPLDMID GIDLETLVEK RTGNMMQPQL AAKIEKSTRK 600
  601 EFENGIEAHG TDALRFTLAA MASTGRDINW DMKRLDGYRS FCNKLWNASR YVLMNTEGQD 660
  661 CGPNSPDYQG GEMELSLADR WIIDLFNQTV KTYDEHMASY RFDLAANTLY EFTWNQFCDW 720
  721 YLELTKPVLQ NGTEAQMRGT RHTLVNVLEA MQRLMHPMMP YITETIWQRV KPLTGVQGDT 780
  781 IMLAPFPAFD AAKVDATAMA DLEWVKQVIV AVRNIRAELN IAPSKPLNAL LRGVSAQDKA 840
  841 RIEANQAFFA TLARLESMTI LGEGETAPMS TTGLIGEMEL LIPMAGLVDV AAEMARIDKQ 900
  901 LEKLTQEIAR IEGKLSNEGF VAKAPPAVID KERAKMADLS RDIDKLTEQK AEFAKLEA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..958] PSI-BLAST 1000.0 Valyl-tRNA synthetase (ValRS) C-terminal domain; Valyl-tRNA synthetase (ValRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  8.24066297904343 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  8.24066297904343 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  8.23006189348918 bayes_pls_golite062009
  • valine-tRNA ligase activity
    		•  7.13767629265822 bayes_pls_golite062009
  • leucine-tRNA ligase activity
    		•  7.03538514482698 bayes_pls_golite062009
  • ligase activity
    		•  6.98979325804867 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
    		•  6.38633897147986 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.56893064485672 bayes_pls_golite062009
  • catalytic activity
    		•  2.26766689929461 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  1.51931993626103 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • binding
    		•  0.987705174689351 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.625793556381714 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.514662028202085 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.2293846471193 bayes_pls_golite062009
  • protein binding
    		•  0.143518788844143 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle