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Protein Overview: gi|24349275, gi|...

General Information:
Name(s) found: gi|24374645 [NCBI NR]
gi|24349275 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374645|ref|NP_718688.1| Ada regulatory protein, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349275|gb|AAN56132.1|AE015749_9 Ada regulatory protein, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 542 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [ISSLink to PubMed article]
    regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    Molecular Function: transcription factor activity [ISSLink to PubMed article]
    methylated-DNA-[protein]-cysteine S-methyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQISVSLNS AAKPPHEQVS AALEDCHLSA SVCREARTSR DPRFDGKFFV GVLTTGIYCR  60
   61 TVCPAVAPKE ENVRYFDSAI KAAQAGLRPC LRCRPDSAPG SNPWKGTGTT LDRAIGLIEA 120
  121 GALSGEHGLT VEALADKLGI SSRYLNKLFT SGFGTSPKQY ALYRQLLFAK QLLHQTQLPI 180
  181 TQIALAAGFN SIRRFNEAFQ QALQLTPTQL RKSSQKSAAK IDEGEGSDTA CPQAMPAHSL 240
  241 SLYQYYRPPL DWQAQLAFYR LRAVAGMEWF SNTDNDCLEK IAQDKQALEY GRTLQIDDIR 300
  301 AVVHIIHEAH LHRFKLTLTF TPDSPIAGLQ KLITQVRRIL DLDADMQQIE HNLQRLTDLK 360
  361 LIPKSGLRIP GAGSLFEAGC RAILGQQVTV VQATKLLNLL VDAYGERFSL NGREYRLFPI 420
  421 PQAIRGASLD ELKMPGARKL ALNALAAFIC ERPNASVDDW LEVKGIGPWT IAYAKLRGLG 480
  481 EPNIFLHTDL IVKKQLLVSV AEQNGLDAQA LKQLDYLTLC QRISADIAPW GSYLTFQLWS 540
  541 NA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..219] PSI-BLAST 16.522879 Methylated Form of N-terminal Transcriptional Regulator Domain of Escherichia Coli Ada Protein
    2 View Details [220..542] PSI-BLAST 30.221849 3-Methyladenine DNA glycosylase II (gene alkA or aidA)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • DNA N-glycosylase activity
    		•  4.08559331236111 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing N-glycosyl compounds
    		•  3.73234184319832 bayes_pls_golite062009
  • DNA-(apurinic or apyrimidinic site) lyase activity
    		•  3.12421941323765 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.10433798291017 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  2.54759386266723 bayes_pls_golite062009
  • catalytic activity
    		•  2.50389926428623 bayes_pls_golite062009
  • DNA binding
    		•  2.2702471315134 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.21292342418702 bayes_pls_golite062009
  • oxidized base lesion DNA N-glycosylase activity
    		•  1.80199518353554 bayes_pls_golite062009
  • alkylbase DNA N-glycosylase activity
    		•  1.75218522602775 bayes_pls_golite062009
  • binding
    		•  1.38924406467484 bayes_pls_golite062009
  • DNA-3-methyladenine glycosylase I activity
    		•  1.14337995879633 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.10322636524937 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.04609043340607 bayes_pls_golite062009
  • transcription factor activity
    		•  0.85246847842951 bayes_pls_golite062009
  • oxidized purine base lesion DNA N-glycosylase activity
    		•  0.473206156100251 bayes_pls_golite062009
  • 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity
    		•  0.433793047073349 bayes_pls_golite062009
  • uracil DNA N-glycosylase activity
    		•  0.29478804124408 bayes_pls_golite062009
  • oxidized pyrimidine base lesion DNA N-glycosylase activity
    		•  0.253198605718519 bayes_pls_golite062009
  • protein binding
    		•  0.19712675878092 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.70

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle