| Protein: | gi|24349275, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 542 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349275, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
307.0 | [0..11] | [542..11] |
|
|
307.0 | [0..1] | [542..1] |
|
|
304.0 | [0..1] | [542..1] |
|
|
287.0 | [0..28] | [541..29] |
|
|
282.0 | [0..28] | [541..29] |
|
|
280.0 | [0..28] | [541..29] |
|
|
279.0 | [0..28] | [541..29] |
|
|
263.0 | [0..25] | [542..6] |
|
|
263.0 | [0..26] | [540..15] |
|
|
262.0 | [0..25] | [539..7] |
|
Region A: Residues: [1-219] |
1 11 21 31 41 51
| | | | | |
1 MKQISVSLNS AAKPPHEQVS AALEDCHLSA SVCREARTSR DPRFDGKFFV GVLTTGIYCR 60
61 TVCPAVAPKE ENVRYFDSAI KAAQAGLRPC LRCRPDSAPG SNPWKGTGTT LDRAIGLIEA 120
121 GALSGEHGLT VEALADKLGI SSRYLNKLFT SGFGTSPKQY ALYRQLLFAK QLLHQTQLPI 180
181 TQIALAAGFN SIRRFNEAFQ QALQLTPTQL RKSSQKSAA
|
| Detection Method: |  |
| Confidence: | 16.522879 |
| Match: | 1wpkA |
| Description: | Methylated Form of N-terminal Transcriptional Regulator Domain of Escherichia Coli Ada Protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [220-542] |
1 11 21 31 41 51
| | | | | |
1 KIDEGEGSDT ACPQAMPAHS LSLYQYYRPP LDWQAQLAFY RLRAVAGMEW FSNTDNDCLE 60
61 KIAQDKQALE YGRTLQIDDI RAVVHIIHEA HLHRFKLTLT FTPDSPIAGL QKLITQVRRI 120
121 LDLDADMQQI EHNLQRLTDL KLIPKSGLRI PGAGSLFEAG CRAILGQQVT VVQATKLLNL 180
181 LVDAYGERFS LNGREYRLFP IPQAIRGASL DELKMPGARK LALNALAAFI CERPNASVDD 240
241 WLEVKGIGPW TIAYAKLRGL GEPNIFLHTD LIVKKQLLVS VAEQNGLDAQ ALKQLDYLTL 300
301 CQRISADIAP WGSYLTFQLW SNA
|
| Detection Method: | |
| Confidence: | 30.221849 |
| Match: | 1dizA |
| Description: | 3-Methyladenine DNA glycosylase II (gene alkA or aidA) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA N-glycosylase activity | 4.08559331236111 | bayes_pls_golite062009 |
| hydrolase activity, hydrolyzing N-glycosyl compounds | 3.73234184319832 | bayes_pls_golite062009 |
| DNA-(apurinic or apyrimidinic site) lyase activity | 3.12421941323765 | bayes_pls_golite062009 |
| transcription regulator activity | 3.10433798291017 | bayes_pls_golite062009 |
| hydrolase activity, acting on glycosyl bonds | 2.54759386266723 | bayes_pls_golite062009 |
| catalytic activity | 2.50389926428623 | bayes_pls_golite062009 |
| DNA binding | 2.2702471315134 | bayes_pls_golite062009 |
| nucleic acid binding | 2.21292342418702 | bayes_pls_golite062009 |
| oxidized base lesion DNA N-glycosylase activity | 1.80199518353554 | bayes_pls_golite062009 |
| alkylbase DNA N-glycosylase activity | 1.75218522602775 | bayes_pls_golite062009 |
| binding | 1.38924406467484 | bayes_pls_golite062009 |
| DNA-3-methyladenine glycosylase I activity | 1.14337995879633 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.10322636524937 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.04609043340607 | bayes_pls_golite062009 |
| transcription factor activity | 0.85246847842951 | bayes_pls_golite062009 |
| oxidized purine base lesion DNA N-glycosylase activity | 0.473206156100251 | bayes_pls_golite062009 |
| 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity | 0.433793047073349 | bayes_pls_golite062009 |
| uracil DNA N-glycosylase activity | 0.29478804124408 | bayes_pls_golite062009 |
| oxidized pyrimidine base lesion DNA N-glycosylase activity | 0.253198605718519 | bayes_pls_golite062009 |
| protein binding | 0.19712675878092 | bayes_pls_golite062009 |
