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Protein Overview: gi|24374562, gi|...

General Information:
Name(s) found: gi|24374562 [NCBI NR]
gi|24349161 [NCBI NR]
Description(s) found:
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  • gi|24374562|ref|NP_718605.1| exonuclease III [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349161|gb|AAN56049.1|AE015740_3 exodeoxyribonuclease III [Shewanella oneidensis MR-1] [NCBI NR]
  • exodeoxyribonuclease III [Shewanella oneidensis MR-1]gi|24349161|gb|AAN56049.1| exodeoxyribonuclease III [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • exodeoxyribonuclease III [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 270 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [ISSLink to PubMed article]
    Molecular Function: exodeoxyribonuclease III activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIVSFNING LRSRLHQLQA LIDSHQPDII GLQETKVHDE AFPLAEVEAM GYHVHYHGGK  60
   61 AHYGVAMLSK VAPLKVQKGF ATDEEDAQRR MIIGTFAQAN GRPLTVLNGY FPQGESIDHP 120
  121 TKYPAKRKFY QDLMAHLHAN HSNDEDIAII GDINISPIDL DIGIGEVNRK RWLKTGKCSF 180
  181 QPEEREWLKT LQDWGLVDTF RQLHPDRSER YSWFDYRSKG FDDNRGLRID VILATPSLAA 240
  241 RLVESDVDYE LRGIDKPSDH APIWSTFKEA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..270] PSI-BLAST 67.0 EXONUCLEASE III FROM ESCHERICHIA COLI

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • deoxyribonuclease activity
    		•  3.12154377354218 bayes_pls_golite062009
  • exonuclease activity
    		•  2.70644978530491 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.37867140645121 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.36841783202726 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  2.28194662430307 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  2.1488318821651 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  2.14106787613836 bayes_pls_golite062009
  • DNA binding
    		•  2.13723924806674 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.96001164690544 bayes_pls_golite062009
  • nuclease activity
    		•  1.78432551160775 bayes_pls_golite062009
  • catalytic activity
    		•  1.76511376991978 bayes_pls_golite062009
  • binding
    		•  1.74593496417303 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.51022821676155 bayes_pls_golite062009
  • transcription activator activity
    		•  0.885026804340494 bayes_pls_golite062009
  • transcription factor binding
    		•  0.77254170640454 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.58884884939295 bayes_pls_golite062009
  • phosphodiesterase I activity
    		•  0.541624633849381 bayes_pls_golite062009
  • protein binding
    		•  0.476649214025345 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  0.36131816190494 bayes_pls_golite062009
  • hydrolase activity
    		•  0.326226276200076 bayes_pls_golite062009
  • inositol or phosphatidylinositol phosphatase activity
    		•  0.228910502815798 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  0.100365481550461 bayes_pls_golite062009
  • phosphatase activity
    		•  0.00559251346312178 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle