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Protein Overview: gi|24374538, gi|...

General Information:
Name(s) found: gi|24374538 [NCBI NR]
gi|24349127 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374538|ref|NP_718581.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349127|gb|AAN56025.1|AE015737_23 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 419 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA recombination [ISSLink to PubMed article]
    Molecular Function: site-specific recombinase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSDSWLKA NLNKVADKPY EKADRDGLSV RVSAKGAITF QMRYRWASNA ARVDIGPYPL  60
   61 LSLKEAREQC EAYRKLLLDN QDPREYKRDK AAKAVSNEGS VEQVFRAWHK SQFSDGRASV 120
  121 KDSTAHEYLR ALEINVFPVL GKKQVDQVTL HQWLDLFESI AAKKPTITNL TLTVSRRALK 180
  181 WAVRRRIIST NELMGIESKE DLNISRKSRK RTLSDDELKI ILQAIDNAKR QRLGNRIMVF 240
  241 MALFFGCRIG ELRLAQKAHF DFTKMIWTVP VENHKTGYKM QRPLLRPIID EIVPLLELAF 300
  301 SLSPNELVFP TEKGGIYSQA ATTRMSNPIN TWAKLNGTPL NEWYLHDLRR TQRTNMSKIT 360
  361 TTEVAETMLG HKLSGIQSIY DHYDYLEEQA KAYRIWWQKL QRLKDPAAYH NVVELKAAQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..419] PSI-BLAST 24.0 Crystal structure of a lambda integrase dimer bound to a COC' core site

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structure-specific DNA binding
    		•  2.96794540657137 bayes_pls_golite062009
  • chromatin binding
    		•  2.66956311972752 bayes_pls_golite062009
  • catalytic activity
    		•  1.85476765215403 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  1.47056442077417 bayes_pls_golite062009
  • DNA binding
    		•  1.08208472364243 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.01945666037816 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.88630365094839 bayes_pls_golite062009
  • binding
    		•  0.849061082531999 bayes_pls_golite062009
  • methyl-CpG binding
    		•  0.644006146507516 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.433129028335043 bayes_pls_golite062009
  • protein binding
    		•  0.391840757563427 bayes_pls_golite062009
  • DNA secondary structure binding
    		•  0.32168641878414 bayes_pls_golite062009
  • transcription factor activity
    		•  0.135216468398819 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0858654055973298 bayes_pls_golite062009
  • four-way junction DNA binding
    		•  0.0788334929658094 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle