Protein Overview: gi|24374418, gi|...

General Information:
Name(s) found:	gi\|24374418 [NCBI NR] gi\|24348989 [NCBI NR]
Description(s) found: Found 4 descriptions. SHOW ALL	gi\|24374418\|ref\|NP_718461.1\| sensory box histidine kinase [Shewanella oneidensis MR-1] [NCBI NR] gi\|24348989\|gb\|AAN55905.1\|AE015727_5 sensory box histidine kinase [Shewanella oneidensis MR-1] [NCBI NR]
Organism:	Shewanella oneidensis MR-1
Length:	869 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	two-component signal transduction system (phosphorelay) [ISS]
Molecular Function:	two-component sensor activity [ISS] signal transducer activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKRPNIEAQ APLTQWQKSL PFKLTLIQLL IASILIFSTA WVILNIQTQQ INEQQTLLNQ  60
   61 NHGQIIIAKL QEMTSQVENQ VNAISQIAML YRHEPEQLSK SIPELLSIES QKDIISGGGI 120
  121 WPEPGAFNRQ KFRDSLFWSH NIHGELVAID SYNDDNFPSY HTEEWYRPTR FFPAGKVFWS 180
  181 KSYVDLTTHE PMVTASSAMW MEHQFIGAAT TDISLEKLNQ LLRNAMLNVS GYVMALDHQN 240
  241 QILAFPNRDN TLQSHSDTTH NLISFDAFAQ TEQALTPIAS ALHLADRTFI EQAIAERVFT 300
  301 QEQMENLTRL SKDSERDMLS AIVNDNAKNH FSTPKRIALV SLAMDPILKG PSLVSVFLMP 360
  361 HTYWKILVVT PVAPLEDTAK KLIEKVGLSL VLIQMFGLIL LFILQHKLIM APIMEMVKAL 420
  421 KRNDSASIEL KAKERHDEVG LLAKTFLSRT QQLEIAMSSL DASNLALEQQ LLSQQHFQQE 480
  481 LNRHKEQLRS LLDYSSTIIY IKDLNGRYTL VNNKYCEVLG IERRKIIGAM DFELFQPPLA 540
  541 ELYQQNDQRA NNSHDALHFE EPIPTPRGEI IYHMTKFDIR DDEDNSIGVG AIGFNVDLKK 600
  601 RQEKEQEKLL QYQLNQLKDQ QHKTQLAQQE IAQLRAQLTD ANDEINLQTQ LNRNKQQSQK 660
  661 LMQHFLSDVM NQMMQEQDRL LAQVCQHKDA DQHTHVVQLM SQQAARLRQI SQLFTVQQSE 720
  721 IRPLHLAQFF QHLLSLLQPQ LLKAQVKVSL SCDEQLVIDG DAWQYLQFFY RLLNNTLQHA 780
  781 FKDHHQHREL LLQLKKQGHE LQLLVKDNGV GLSASKLEQL RHEMQQKQCT GTLSSLNLWI 840
  841 KDELKGELNI KSELNQGTRI ECHWPLSKA

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..369]	FFAS03	3.89	No description for 2p7jA was found.
2	View Details	[370..453]	FFAS03	2.15	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
3	View Details	[454..623]	FFAS03	4.25	Crystal Structure of the heme PAS sensor domain of Ec DOS (ferric form)
4	View Details	[624..869]	PSI-BLAST	44.0	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
two-component sensor activity	2.88093868237858	bayes_pls_golite062009
protein histidine kinase activity	2.86151216540335	bayes_pls_golite062009
phosphotransferase activity, nitrogenous group as acceptor	2.80671328721504	bayes_pls_golite062009
two-component response regulator activity	1.62873572477094	bayes_pls_golite062009
signal transducer activity	1.10204821596482	bayes_pls_golite062009
molecular transducer activity	1.10204821596482	bayes_pls_golite062009
binding	0.704248066961418	bayes_pls_golite062009
protein kinase activity	0.510808146850279	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.399812011068743	bayes_pls_golite062009
kinase activity	0.223004824807113	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0995264574132551	bayes_pls_golite062009

2

No functions predicted.

3

Term	Confidence	Notes
binding	1.67984576110273	bayes_pls_golite062009
two-component response regulator activity	1.41577088905201	bayes_pls_golite062009
transcription regulator activity	0.931375605669218	bayes_pls_golite062009
protein binding	0.888256242702267	bayes_pls_golite062009
DNA binding	0.533187513797767	bayes_pls_golite062009
two-component sensor activity	0.466388018187262	bayes_pls_golite062009
protein histidine kinase activity	0.452475261443277	bayes_pls_golite062009
phosphotransferase activity, nitrogenous group as acceptor	0.409938237891918	bayes_pls_golite062009
nucleic acid binding	0.387046112137798	bayes_pls_golite062009
signal transducer activity	0.341738261779128	bayes_pls_golite062009
molecular transducer activity	0.341738261779128	bayes_pls_golite062009
transcription factor activity	0.15709070306709	bayes_pls_golite062009

4

No functions predicted.

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

[View Details]

Source: Reynolds et al. 2008. Manuscript submitted

Philius confidence legend

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