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Protein Overview: gi|24374154, gi|...

General Information:
Name(s) found: gi|24374154 [NCBI NR]
gi|24348658 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374154|ref|NP_718197.1| DNA polymerase III, delta prime subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348658|gb|AAN55641.1|AE015703_3 DNA polymerase III, delta prime subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 318 amino acids

    Gene Ontology:
    Cellular Component: DNA polymerase III complex [ISSLink to PubMed article]
    Biological Process: DNA replication [ISSLink to PubMed article]
    Molecular Function: DNA-directed DNA polymerase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEHRGFDVL SLPWLDVPRQ AFLTQLQTQK VPHAQLVGID SAYGGELLSV FMARAAMCSQ  60
   61 PTHTGGCGFC KSCQLFDAGN HPDFYQIEAD GHQIKVDQIR ELCSRLSATA QQSGRRVAII 120
  121 HHSERLNSAS ANALLKTLEE PGKDTLLLLH SDTPARLMAT ISSRCQRLPF VAPSKTLIKN 180
  181 WLIQQCQIQE DVTWCLSVVG GPLKLAESLQ SNSTQPSRYQ TLLGFRKDWA QSLSSGHLCA 240
  241 SLLIISEQQI IDALKVLYLL LRQILLKNGN QDAYVQAQIG NLAAKVMGMC HSLSAMPSVN 300
  301 YLGLCQSYVL EYRDITNK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..318] PSI-BLAST 51.39794 ADP Bound E. coli Clamp Loader Complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed DNA polymerase activity
    		•  6.09279996112705 bayes_pls_golite062009
  • DNA polymerase activity
    		•  6.04865791514294 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  3.99580940620614 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.23646936731119 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.77451606086272 bayes_pls_golite062009
  • catalytic activity
    		•  1.32370671504792 bayes_pls_golite062009
  • transferase activity
    		•  1.23626141560528 bayes_pls_golite062009
  • helicase activity
    		•  0.895387263223335 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.8104901979223 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.625617128641089 bayes_pls_golite062009
  • binding
    		•  0.594355060369958 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.248432446853676 bayes_pls_golite062009
  • protein-DNA loading ATPase activity
    		•  0.24468171323128 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.217252531553173 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.215962398124297 bayes_pls_golite062009
  • DNA clamp loader activity
    		•  0.20238478387743 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • ATPase activity
    		•  0.0740243885501273 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0398638249772338 bayes_pls_golite062009
  • DNA binding
    		•  0.0064778111446141 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle