YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|24348140, gi|...

General Information:
Name(s) found: gi|24373759 [NCBI NR]
gi|24348140 [NCBI NR]
Description(s) found:
Found 5 descriptions.
SHOW ALL
  • gi|24373759|ref|NP_717802.1| DNA ligase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348140|gb|AAN55246.1|AE015662_8 DNA ligase, ATP-dependent [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 311 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [ISSLink to PubMed article]
    DNA replication [ISSLink to PubMed article]
    DNA recombination [ISSLink to PubMed article]
    Molecular Function: DNA ligase (ATP) activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLRGKGMA LTTRLPFVRF TALKCLGLII GLCCVLITAS FASPAPNIQL ATEYSLDNHS  60
   61 NNDAQISTFF VSEKLDGVRG YWDGQRLFTR QGNPILAPSW FTAEFPAIAM DGELWLGRGQ 120
  121 FEAISGLIRQ ASPKDADWQN VRFMVFDLPT TKGSFEERYH KMQALIAGKS VYLQVIEQFS 180
  181 VASVEALYQT LDTLVALGAE GLILHRRTAI YTPGRNPNVM KLKPYLDAEA TVIGYIAGKG 240
  241 QFSGKMGALR VQTPDGRIFN IGTGFNLAER QHPPAIGTLI TYKYLGLTVN GLPRFASYLR 300
  301 IRTDIDPKNK E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..311] PSI-BLAST 77.69897 Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming phosphoric ester bonds
    		•  4.3248432594553 bayes_pls_golite062009
  • DNA ligase activity
    		•  4.32201730952065 bayes_pls_golite062009
  • DNA ligase (NAD+) activity
    		•  3.23439045843438 bayes_pls_golite062009
  • catalytic activity
    		•  2.52414801555837 bayes_pls_golite062009
  • ligase activity
    		•  1.91469215096842 bayes_pls_golite062009
  • DNA ligase (ATP) activity
    		•  1.83677193007569 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle