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Protein Overview: gi|24347898, gi|...

General Information:
Name(s) found: gi|24373576 [NCBI NR]
gi|24347898 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24373576|ref|NP_717619.1| DNA polymerase III, gamma and tau subunits [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347898|gb|AAN55063.1|AE015643_10 DNA polymerase III, gamma and tau subunits [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 1002 amino acids

    Gene Ontology:
    Cellular Component: DNA polymerase III complex [ISSLink to PubMed article]
    Biological Process: DNA replication [ISSLink to PubMed article]
    Molecular Function: DNA-directed DNA polymerase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYQVLARKW RPATFEQMVG QSHVLHALTN ALTQQRLHHA YLFTGTRGVG KTSLARLFAK  60
   61 GLNCETGVTA SPCGVCGSCV EIAQGRFVDL IEVDAASRTK VDDTRELLDN VQYRPTRGRF 120
  121 KVYLIDEVHM LSRSSFNALL KTLEEPPEHV KFLLATTDPQ KLPVTVLSRC LQFNLKSLTQ 180
  181 QEIGTQLQHI LTQEQLPFEH EALGLLAKSA NGSMRDALSL TDQAIAFGGG TVMLNQVQSM 240
  241 LGSIDEQHVL GLLKALTDAD IGALMQSCAQ VLAYGADAQE VLRSLLELLH QITLTQFAPA 300
  301 AAQQSLYSAQ IQAFAEQLAP EQVQLYYQIL LTGRKDLPHA PDPKSGLEMA LLRAVAFVPE 360
  361 KSVKRWQVDD AVKVDLSAQP ALTPQATIPP EVPAERQLAV NAPVAEKKTL LATVANPEAQ 420
  421 LQAETTPETA LEDDEPELNA ALIAEQQVIL SQAQSQGFGA SADPVVSSNT ALNQDVNSSD 480
  481 PTDPDTALTE QTATEDVLDA QNTAGDLAPE PYVAEAYGQY DYAQSNDAQS NYAQFNHAQS 540
  541 YDTSTPLDAY QDDYAHFMSE DAAEQLIISE HAVEQLSASE GNLFSNGSAQ HSASNQTGQV 600
  601 FAVDNTQVAK AAVSLEDDDI LSAVLAARES LLSDLDALST KDGDGKKLSP DVKAKTPTSN 660
  661 AHSRPATSVN VSPRPGQNAV TLEFESDFEL PFDDDFEAEI YTKPELSTKA TNAPLAPLST 720
  721 RPITHSIIVP STQQSAAAQH LPLDPNDRPP WEDAPVAECH HGNAEPITTS RQVNEESHLR 780
  781 QESAALHAPL LAVEPVQVAP ALTLPTNTQA AQVEQAAGQS HQLNHPDEVP ATPPRELDAA 840
  841 APPAPASDLT VAQSITGHPL DLHWYKLMAS LDIGGRVRQL AVNSICQVQS NPLPLLLKPD 900
  901 QKHLAAQVAI EQLEQALTAA LGAPRQVEVV IGTDPSRETP LELRKRFHQE LLQQARQSLI 960
  961 MDDNVQWLIN RFGAELENDS LLYPPELLNQ RSGLIPALPE PE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..403] PSI-BLAST 113.0 ADP Bound E. coli Clamp Loader Complex
    2 View Details [404..485] deduced N/A No confident structure predictions are available.
    3 View Details [486..641] deduced N/A No confident structure predictions are available.
    4 View Details [642..853] deduced N/A No confident structure predictions are available.
    5 View Details [854..1002] PSI-BLAST 27.39794 No description for 2ayaA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed DNA polymerase activity
    		•  6.09279996112705 bayes_pls_golite062009
  • DNA polymerase activity
    		•  6.04865791514294 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  3.99580940620614 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.23646936731119 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.77451606086272 bayes_pls_golite062009
  • protein binding
    		•  1.47495963188519 bayes_pls_golite062009
  • catalytic activity
    		•  1.32370671504792 bayes_pls_golite062009
  • transferase activity
    		•  1.23626141560528 bayes_pls_golite062009
  • binding
    		•  1.1871951458401 bayes_pls_golite062009
  • helicase activity
    		•  0.895387263223335 bayes_pls_golite062009
  • microtubule motor activity
    		•  0.87576779858246 bayes_pls_golite062009
  • motor activity
    		•  0.85227282360407 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.8104901979223 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.625617128641089 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.248432446853676 bayes_pls_golite062009
  • protein-DNA loading ATPase activity
    		•  0.24468171323128 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.217252531553173 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.215962398124297 bayes_pls_golite062009
  • DNA clamp loader activity
    		•  0.20238478387743 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • ATPase activity
    		•  0.0740243885501273 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0398638249772338 bayes_pls_golite062009
  • DNA binding
    		•  0.0064778111446141 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle