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Protein Overview: gi|24346905, gi|...

General Information:
Name(s) found: gi|24372811 [NCBI NR]
gi|24346905 [NCBI NR]
Description(s) found:
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  • gi|24372811|ref|NP_716853.1| sensor histidine kinase/response regulator TorS [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346905|gb|AAN54298.1|AE015567_4 sensor histidine kinase/response regulator TorS [Shewanella oneidensis MR-1] [NCBI NR]
  • sensor histidine kinase/response regulator TorS [Shewanella oneidensis MR-1]gi|24346905|gb|AAN54298.1| sensor histidine kinase/response regulator TorS [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • sensor histidine kinase/response regulator TorS [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 1025 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: two-component signal transduction system (phosphorelay) [ISSLink to PubMed article]
    Molecular Function: two-component sensor activity [ISSLink to PubMed article]
    two-component response regulator activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLSLSRRS LTGRLMLAFS VLGLLLLLLV SLGSLSLHWL KQADRYLYEE SLPASQAARQ  60
   61 LVQASNALSD GVTQLGQVED ERQREFIGRK LNLESATMLN SIKVLLALDV NEDNHLPVLA 120
  121 GQIIEQLTLL GQSVGQRITL GDELQRRARE LSVAAAHASE LLQSELAVVD SAILAKLSQA 180
  181 YPDMAGNKRS GQLLDDVIER ELDIQEQLNR ALKLVHQIAL LSQLFEVSEL QSELQLSVPR 240
  241 LLATFASTLP SHPVAHINQQ KGTAIEQASE AVTELSAPEV GIDLMALTTV SELIRDPGRL 300
  301 NALKAELVTL KHTPKIIKLQ RDLSQSLQRQ QRQQQALAEK LYSLNTLVDS ALNQQQQRAE 360
  361 LARSDYLMQL SYARFGLLAT GMLMFVIMGW VIYRVIYRGI ALRLNQATQA MSRLSLGDIN 420
  421 VSLDARGDDE LTAMANAIEA FKRKTAHNLK LQADLRQVAD ELTEHKKALE QTVATRTQEL 480
  481 AETNLRLDAE AKGHAKARVV AEEASQAKSQ FLATMSHEIR TPLNGLLGTL TLLGQSQLPP 540
  541 AQQQMLALSQ YSGTLLQTVL SDILDFSRLE QGNLTNEPRP TDINALLDEV LAIMVAGANL 600
  601 AGLSLRLNRP QLPACINIDG PKLRQVLFNL IGNGIKFTSE GSVSLNVSLQ GGRLAFVVAD 660
  661 TGVGIAPEVR EQLFIPYSTL PNQGRSRGTG LGLAICKQLV ELMDANGRGI WVKSEPGKGS 720
  721 EFGFELCFTQ CDKAQDAQTL VHKQVHTQRV LVVEDNKVNA MVAQGFLAHL GHSSTLAASC 780
  781 QLALECVSAD KAFDAVMLDI QLSDGSGVAL LPQLKALFGA KNVKFAAFTA QMQMEDLSLY 840
  841 REVGFDTVLA KPLSLQTLTQ WLGVAMASSS LETESPGLSA SPSFISASSA PLAQATDTSG 900
  901 AIPLGNQATE TLLDIEQLQQ DIEVLGVKAV SDMLALYKTS SAEQIERLSE ATFVESSADS 960
  961 AKLLHALKGS SASMGLKALT QCCQVWEKQL KTTGAQKLEI QSANELRACW LASMTALEQW1020
 1021 LVTVE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..297] deduced N/A No confident structure predictions are available.
    2 View Details [298..479] FFAS03 3.33 M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
    3 View Details [480..730] PSI-BLAST 46.0 Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
    4 View Details [731..1025] PSI-BLAST 20.69897 Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • two-component response regulator activity
    		•  7.02872640261738 bayes_pls_golite062009
  • signal transducer activity
    		•  4.51666042720644 bayes_pls_golite062009
  • molecular transducer activity
    		•  4.51666042720644 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.44888100104099 bayes_pls_golite062009
  • protein histidine kinase activity
    		•  2.35011582062573 bayes_pls_golite062009
  • two-component sensor activity
    		•  2.32303301074957 bayes_pls_golite062009
  • phosphotransferase activity, nitrogenous group as acceptor
    		•  2.28838869071567 bayes_pls_golite062009
  • binding
    		•  1.22427537074115 bayes_pls_golite062009
  • DNA binding
    		•  1.11037597107903 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.93151849951839 bayes_pls_golite062009
  • transcription factor activity
    		•  0.62886970109503 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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